Plant FIBer expression Database

Potri.014G169100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48220 516 / 0 Aldolase-type TIM barrel family protein (.1.2.3)
AT2G04400 497 / 2e-176 Aldolase-type TIM barrel family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006354
[exp]
533 / 0 AT2G04400 540 / 0.0 Aldolase-type TIM barrel family protein (.1)
Lus10012310
[exp]
529 / 0 AT2G04400 537 / 0.0 Aldolase-type TIM barrel family protein (.1)
Lus10001179
[exp]
522 / 0 AT5G48220 534 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3)
Lus10001753
[exp]
108 / 8e-26 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00218 IGPS Indole-3-glycerol phosphate synthase
Representative CDS sequence
>Potri.014G169100.2 pacid=42763688 polypeptide=Potri.014G169100.2.p locus=Potri.014G169100 ID=Potri.014G169100.2.v4.1 annot-version=v4.1
ATGGCGGGGTTGATTTCTTTGAGATCAACAAGGGTTCCTTTCCTTACCAAACCCAAACCTTCTCCTCTCCATCACGGGCCCAACAACTTCTCCATGAACC
CAAACCCGGGTGCCGGGAATCGGTTTTCCGTTACCTCCATTAAAGCTCAACAGGCTGAGGCTTCAACAGTGAACAAGGAAGATGAGCTAAAAGCGAAGGA
ATGGGAAGTGAGGATGCTGCAAGAAGAGGTAGCTGCAAGCCAAGGTATAAGAATCAGACGAAGGCCACCCACTGGCCCACCTGTGCACTATGTGGGACCC
TTTGAATTTCGGATTCAGAGTGAAGGCAACACTCCTCGTAACATCCTTGAGGAAATTGTTTGGAACAAGGATGTGGAAGTTTCTCACATGAAACAGAGAA
AGCCACTTTCTTCGCTAAAGAAATATCTTGAGAATGCTCCTCCCACAAGGGATTTTGTTGGAGCTCTTAGGGAAGCAAATCATCGAACGGGGTTTCCTGG
TTTGATTGCTGAAGTCAAGAAGGCTTCACCAAGTAGAGGGATTTTAAGAGAGGATTTTGATCCTGTTGAAATTGCCAAAGCTTACGAGAAAGGAGGAGCC
GCGTGTCTTAGTGTTTTGACAGATGAAAAATATTTTAAGGGGAGCTTTGAAAACCTGGAGGCAATAAGAAATGCTGGAGTAAAGTGCCCCCTGCTTTGCA
AAGAGTTTGTTGTGGACGCATGGCAGATCTTCTATGCTCGGATTAAAGGTGCAGATGCGATTCTTTTAATTGCTGCTGTTCTTCCTGATCTTGACATCAA
ATACATGACTAAGATATGCAAGATGCTTGGTTTGACTGCACTTGTGGAGGTCCATGATGAGAGAGAAATGGATCGCGTACTTGCAATAGAAGGGGTCGAA
CTTATTGGCATCAACAATCGTAACCTTGAAACATTTGAGGTTGATATCAGTAACACAAAGAAGCTTCTTGAAGGAGAGCGCGGTCAACTTATCTGTCAAA
AAGACATAATTGTTGTTGGGGAATCTGGGCTATTTACTCCTGATGATATTGCTTATGTGCAAGAAGCTGGTGTCAAAGCAGTTTTGGTTGGGGAGTCAAT
TGTGAAACAGAGTGATCCTGGGAAGGGAATATCAGGACTTTTTGGTAAAGATATCTCCTTGTAA
AA sequence
>Potri.014G169100.2 pacid=42763688 polypeptide=Potri.014G169100.2.p locus=Potri.014G169100 ID=Potri.014G169100.2.v4.1 annot-version=v4.1
MAGLISLRSTRVPFLTKPKPSPLHHGPNNFSMNPNPGAGNRFSVTSIKAQQAEASTVNKEDELKAKEWEVRMLQEEVAASQGIRIRRRPPTGPPVHYVGP
FEFRIQSEGNTPRNILEEIVWNKDVEVSHMKQRKPLSSLKKYLENAPPTRDFVGALREANHRTGFPGLIAEVKKASPSRGILREDFDPVEIAKAYEKGGA
ACLSVLTDEKYFKGSFENLEAIRNAGVKCPLLCKEFVVDAWQIFYARIKGADAILLIAAVLPDLDIKYMTKICKMLGLTALVEVHDEREMDRVLAIEGVE
LIGINNRNLETFEVDISNTKKLLEGERGQLICQKDIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQSDPGKGISGLFGKDISL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48220 Aldolase-type TIM barrel famil... Potri.014G169100
[exp]
0 1
AT4G32180 ATPANK2 pantothenate kinase 2 (.1.2.3) Potri.008G189500
[exp]
1.41 0.8426
AT5G63520 unknown protein Potri.012G100500
[exp]
4.47 0.8334
AT4G38620 MYB AtMYB4 myb domain protein 4 (.1) Potri.010G114000
[exp]
8.83 0.8555 MYB165
AT2G15290 ATTIC21, TIC21,... PERMEASE IN CHLOROPLASTS 1, CH... Potri.009G096300
[exp]
13.07 0.8263
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Potri.007G056200
[exp]
16.97 0.8065
AT4G38130 ATHDA19, ATHD1,... ARABIDOPSIS HISTONE DEACETYLAS... Potri.004G209800
[exp]
20.00 0.7441 RPD3.2
AT3G61180 RING/U-box superfamily protein... Potri.002G155200
[exp]
21.74 0.8169
AT4G13310 CYP71A20 "cytochrome P450, family 71, s... Potri.003G192300
[exp]
24.97 0.8147
AT2G02590 unknown protein Potri.010G034400
[exp]
25.37 0.8386
AT3G23100 XRCC4 homolog of human DNA ligase iv... Potri.010G075900
[exp]
26.98 0.8136

Potri.014G169100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.