Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04360 353 / 9e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016086 [exp] 406 / 2e-142 AT2G04360 340 / 5e-117 unknown protein Lus10016084 [exp] 406 / 2e-142 AT2G04360 340 / 5e-117 unknown protein Lus10012308 [exp] 405 / 2e-142 AT2G04360 347 / 2e-119 unknown protein Lus10000124 [exp] 352 / 5e-122 AT2G04360 296 / 4e-100 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13396 [poplar] [flax] PLDc_N Phospholipase_D-nuclease N-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G169200.6 pacid=42763694 polypeptide=Potri.014G169200.6.p locus=Potri.014G169200 ID=Potri.014G169200.6.v4.1 annot-version=v4.1 ATGGTTGCTAGCACAAATCTCATCATCTCCTGCAACTTCTCTTGTCTTCCTCTCAAGGTTAACCCAAAGCCCAAATCTTTACTCAAAACTCATTACACAT CTTTACTGTTTTCAAATACCAGTACAAGAGAAGGCTTGAATATTTCAAATTTAGTTAAGCCCCAATACATTTATAACAATAAGAAGGGTGTTCTTCAGAC TTGTTATAGCACCTTAAACTCTGACAACAAGTCACCGGATGACCAAGTTTTAGATAAAGATGCTATGGGTGGTGGTAAAGAGGGAGAAAGGGACTGGACA ACCTCAATTTTGCTATTTGTCTTCTGGGGTGGACTCATTTACTATGTTTTCAACCTCACTCCAGACCAGACTCCGTCAAGGGACATGTATTTCTTGGAGA AACTTCTCTATTTGAAGGGAGATGATGGCTTTAGGATGAATTCTGTGCTTGTGTCATTGTGGTACATCATGGGTCTTTGGCCTTTAGTTTATAGCATGCT TCTACTTCCAACAGGCAGAAGCTCAAAAACCAATATTCCTGTTTGGCCATTCCTTATTCTTTCATGTTTTGGTGGTGCATATGCTCTTCTACCCTATTTT ATTCTCTGGAGACCGCCACCACCTCCTGTTGAAGAAAATGAGCTTGGAAGATGGCCTCTTAATTTTCTGGAATCAAAGTTGACTTCTGGAATATTACTGG CTGCAGGGCTGACTATAATCGTCAATGCAGCTTTAAATGGTGGTGAATGGAAGGAGTTCTACCAGTATTTCAGGGAAAGCAAATTCATCCACATCACATG CCTTGATTTTACTCTATTATCTGCTTTTGGCCCCTTTTGGGTTTACAACGATATGACTGCCAGGAAGTGGTATGACAAAGGTTCATGGCTTCTCCTCATA TCACTGGTTCCATTCTTGGGTCCTGCATTGTATCTAGTTCTACGGCCATCACTCTCAGAAATGCCTGTTTCACAGAGCCCAACTTCATCTGAAGAGCAGT AG
AA sequence Show only first row Show all	>Potri.014G169200.6 pacid=42763694 polypeptide=Potri.014G169200.6.p locus=Potri.014G169200 ID=Potri.014G169200.6.v4.1 annot-version=v4.1 MVASTNLIISCNFSCLPLKVNPKPKSLLKTHYTSLLFSNTSTREGLNISNLVKPQYIYNNKKGVLQTCYSTLNSDNKSPDDQVLDKDAMGGGKEGERDWT TSILLFVFWGGLIYYVFNLTPDQTPSRDMYFLEKLLYLKGDDGFRMNSVLVSLWYIMGLWPLVYSMLLLPTGRSSKTNIPVWPFLILSCFGGAYALLPYF ILWRPPPPPVEENELGRWPLNFLESKLTSGILLAAGLTIIVNAALNGGEWKEFYQYFRESKFIHITCLDFTLLSAFGPFWVYNDMTARKWYDKGSWLLLI SLVPFLGPALYLVLRPSLSEMPVSQSPTSSEEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04360			unknown protein		Potri.014G169200 [exp]	0	1
AT3G04550			unknown protein		Potri.013G044900 [exp]	1.73	0.9780
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	2.82	0.9779
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	4.89	0.9714
AT4G35220			Cyclase family protein (.1)		Potri.001G301600 [exp]	5.29	0.9612
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	8.48	0.9763
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	8.83	0.9666
AT2G38780			unknown protein		Potri.001G024200 [exp]	9.79	0.9749
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	9.89	0.9704
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	11.18	0.9715	Pt-RPL1.1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.004G222600 [exp]	12.96	0.9551

Compare expression of checked genes

Potri.014G169200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.