Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07670 754 / 0 Rubisco methyltransferase family protein (.1) AT5G14260 123 / 3e-30 Rubisco methyltransferase family protein (.1.2.3) AT1G14030 103 / 2e-23 Rubisco methyltransferase family protein (.1) AT3G55080 99 / 5e-22 SET domain-containing protein (.1.2) AT2G18850 83 / 1e-16 SET domain-containing protein (.1.2) AT5G17240 57 / 1e-08 SDG40 SET domain group 40 (.1) AT3G56570 46 / 6e-05 SET domain-containing protein (.1) AT4G20130 44 / 0.0002 PTAC14 plastid transcriptionally active 14 (.1) AT1G24610 42 / 0.0007 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066500 [exp] 113 / 9e-27 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.008G047400 [exp] 102 / 4e-23 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.008G090500 [exp] 99 / 5e-22 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.006G168900 [exp] 96 / 6e-21 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 67 / 8e-12 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.004G081400 [exp] 63 / 2e-10 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.004G135700 [exp] 53 / 4e-07 AT3G56570 446 / 9e-153 SET domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012309 [exp] 821 / 0 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 704 / 0 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016085 [exp] 214 / 3e-63 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10036780 [exp] 114 / 3e-27 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10022333 [exp] 111 / 1e-25 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 105 / 4e-24 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10040345 [exp] 95 / 2e-20 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10006953 [exp] 89 / 1e-18 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 86 / 2e-17 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10013825 [exp] 58 / 8e-09 AT3G56570 439 / 9e-152 SET domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.014G169300.2 pacid=42763582 polypeptide=Potri.014G169300.2.p locus=Potri.014G169300 ID=Potri.014G169300.2.v4.1 annot-version=v4.1 ATGGCTGAAGCTTGTAGAATTATTCTCAACACTACATTTCTTCCTTCACTCCATTCTCTCCACAAAACACACAAAAAAGTCTCTTACTCACAACCTTTCT TGCACAAAAGGCACCCAGCAATTCAGTGCTCAATTTCAACAAGCAGTGACACCAAAGCAGCAGCAAAAGTGTCCGAGACCGTGCCATGGGGATGTGACAT CGATTCTCTGGAGAACGCTGAGGCCCTTCAGAAATGGTTGTCTGACTCAGGCCTTCCTCCTCAGAAAATGGCAATACAAAAAGTGGAAGTGGGAGAGAGA GGTTTGGTTGCTTTAAAGAATATTAGGAAGGGTGAGATGCTGCTCTTCGTTCCTCCCTCCCTTGTCATCGCTGCCGACTCTGAGTGGAGCTGCCCTGAGG CAGGTGAAGTGTTAAAAAAATACTCTGTACCGGATTGGCCATTGCTTGCAACCTATCTGATTAGTGAAGCAAGTTTTGAGAAATCATCAAGATGGAGCAA TTACATCTCGGCCCTACCTAGGCAGCCCTATTCTCTTTTGTACTGGACACGAGCGGAACTAGATACGTATCTGGAAGCTTCACAGATCAGAGAGCGGGCA ATAGAAAGGATTACCAATGTTACTGGAACATATAATGATTTAAGGCTCAGGATATTTTCCAAGTATCCTCATCTGTTTCCTGAAGAGGTATTCAATATGG AGACTTTCAAGTGGTCGTTTGGCATTCTCTTCTCTCGCTTGGTTCGTTTACCATCGATGGATGGAAGAGTTGCCTTGGTTCCCTGGGCAGATATGCTGAA TCACAGTTCTGAGGTGGAGACCTTTTTGGATTATGATAAATCATCAAAGGGAGTGGTATTTACAACAGATCGACCATACCAGCCAGGTGAGCAGGTTTTC ATATCATATGGAAGGAAATCTAATGGAGAGCTGTTGCTATCTTATGGATTTGTTCCAAGGGAGGGCACCAATCCTAGTGATTCAGTGGAGTTGTCATTGT CTCTGAAAAAATCTGATAAATGTTACAAAGAAAAGTTAGAAGCTCTGAAGAAGCACGGTTTGTCAGTATCTCAATGTTTTCCTCTACAAGTCACTGGTTG GCCGTTAGAGTTAATGGCATATGCTTATCTGGCAGTCAGCCCTCCAAGCATGAGCAGGCAGTTTGAAGAGATGGCTGCTGCAGCATCAAATAAGACAACC ACCAACAAGAAAATAACATACCCTGATATTGAGGAACAAGCATTGCAATTCATATTGGATAGTTGTGAGTTAAGCATATCAAAATACACCAAATTCTTGC AGGCAAGTGGATCAATGGATTTGGATGTGACATCTCCAAAGCAACTTAACAGAAGATTGTTCCTGAAACAGCTAGCAGTGGACTTGTGCAGCAGTGAACG CAGAATACTATTTCGTGCTCAATATGTACTGAGGAGAAGATTGAGGGATATAAGGAGCGGTGAATTGAGAGGTCTGAAGATTTTTAATGGGTTCAGAAAC CTTTTTAGATAA
AA sequence Show only first row Show all	>Potri.014G169300.2 pacid=42763582 polypeptide=Potri.014G169300.2.p locus=Potri.014G169300 ID=Potri.014G169300.2.v4.1 annot-version=v4.1 MAEACRIILNTTFLPSLHSLHKTHKKVSYSQPFLHKRHPAIQCSISTSSDTKAAAKVSETVPWGCDIDSLENAEALQKWLSDSGLPPQKMAIQKVEVGER GLVALKNIRKGEMLLFVPPSLVIAADSEWSCPEAGEVLKKYSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDTYLEASQIRERA IERITNVTGTYNDLRLRIFSKYPHLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSSEVETFLDYDKSSKGVVFTTDRPYQPGEQVF ISYGRKSNGELLLSYGFVPREGTNPSDSVELSLSLKKSDKCYKEKLEALKKHGLSVSQCFPLQVTGWPLELMAYAYLAVSPPSMSRQFEEMAAAASNKTT TNKKITYPDIEEQALQFILDSCELSISKYTKFLQASGSMDLDVTSPKQLNRRLFLKQLAVDLCSSERRILFRAQYVLRRRLRDIRSGELRGLKIFNGFRN LFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	0	1
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	1.00	0.9872
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	1.41	0.9835
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	2.00	0.9802
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	3.00	0.9830	Pt-HCF101.1
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	4.58	0.9789
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	4.69	0.9751
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	5.00	0.9796	RPOD1.1
AT3G53920		SIG3, SIGC	SIGMA FACTOR 3, RNApolymerase ...		Potri.006G234400 [exp]	5.47	0.9675
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	6.92	0.9793
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	6.92	0.9730

Compare expression of checked genes

Potri.014G169300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.