Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04350 1050 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 910 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT5G27600 359 / 8e-114 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 330 / 9e-103 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 318 / 1e-98 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 316 / 9e-98 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 313 / 1e-96 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 313 / 2e-96 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 297 / 1e-90 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 162 / 1e-41 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169600 [exp] 1127 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 925 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 893 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.013G021300 [exp] 352 / 5e-111 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.001G091900 [exp] 342 / 1e-107 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.010G090200 [exp] 343 / 2e-107 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.003G139700 [exp] 330 / 5e-103 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 318 / 1e-98 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 279 / 6e-84 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016083 [exp] 1115 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 1105 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10018178 [exp] 905 / 0 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10025657 [exp] 899 / 0 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 873 / 0 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 870 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016085 [exp] 561 / 0 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 354 / 7e-112 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 352 / 4e-111 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 345 / 4e-108 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.014G169400.8 pacid=42762404 polypeptide=Potri.014G169400.8.p locus=Potri.014G169400 ID=Potri.014G169400.8.v4.1 annot-version=v4.1 ATGGCTGATTCCGAGGGAAGTTTTCCGAGCTCACCTGTTCTAGATAAATTGGACTCTAATGATTACTCGTCAGTTGGGAAAGGCTATGGAACATATGGCA TTGTGGGTGCTGCTGCTGTTGCTATCCTCATACCTATATTACTTTCTACCATCTTCATGGGAAAGAAAAAGGTGAAACAGAGAGGAGTCCCGGTAGAGGT AGGCGGTGAGGCAGGTTATGCAGTTCGCAATGCCCGGCATGCTGAGCTAGTTGAAGTCCCTTGGAAAGGGGCAACAACCATGGCAGCTCTATTTGAGCAG TCCTGTAGAAAGCATTCGCCAGAACGATTTCTTGGAACAAGGAAGCTAATTAGTAAGGAATTTGTTACTGCTAGTGATGGTAGGAAGTTTGAGAAGCTGC ACCTGGGTGATTATGAATGGCAAACCTATGGACAGGTTTTTGATCGTGTTTGTAACTTTGCATCCGGGCTTATTATGTTAGGGCATAATGAGGATACTCG TGCTGCAATTTTTGCTGATACTCGGGCTGAGTGGTTGATTGCCTTTCAGGGATGCTTTCGGCAGAACATTACTGTTGTCACTATTTATGCTTCTCTAGGT GTGGATGCTTTGATCCATTCACTCAATGAGACTCAAGTATCTACCCTGATCTGTGATCCCAAGCAGTTGAAAACGCTAGCTGCAATAAGCTCAAAAATAA CAACTATTAAGAATGTCATTTACTTTGAAGATGGAGAAACTACAAATGATTTGGGCTTATCTGCAAGCACAAGCTATTGGAAGGTTTCATCTTTTTCTGA AGTTGAGGAACTGGGGAAGAACAGTCATGTTCCTCCAAGCTTACCTACAAAGAATGGAATTGCTGTTGTTATGTACACAAGTGGCAGTACAGGCCAGCCA AAGGGAGTCATGATTACACATGGCAACATTGTAGCCACTGCTGCAGCAGTTATGACGGTGATTCCAAAACTGAGTAGCAATGATGTATATTTGGCTTATT TGCCCCTAGCCCATGTTTTTGAACTGGCAGCTGAGTCTGTAATGTTGTCTGTAGGTTGTGCTATTGGCTACGGTTCAGCATTGACTTTGACAGACACTTC TAACAAAATTAAGAAAGGAACCAAGGGTGATGCATCTATGTTAAATCCTACTCTCATGCCGGCAGTTCCAGCCATACTAGATCGTGTCCGGGATGGAGTT CTAAAAAAGGTTGAGGAGAAGGGAGGGTTAGCAAAGAAGCTTTTCAACATTGGATATAAGCGCAAAATGGCAGCCATAGAAGGAAGCTGGTTTGGTGCTT CGGGACTGGAGAGAATGCTGTGGGATGTCATTGCCTTCAAACAAATACGTGCTATACTAGGAGTTCGTATGCGATTCATCCTATGTGGTGGAGCCCCTTT ATCTGCGGATTCACAGCGGTTCACCAACATCTGCATGGGGGCTATTATTGGTCAAGGATATGGCTTGACAGAAACATGTGCTGGAGCTGCTTTCACTGAG TGGGACGACCCGTCCGTGGGCCGTGTTGGACCTCCTCTTCCATGTTGCTACATTAAGCTTGTTTCTTGGGAAGAAGGTGGGTATACAGTGGCCGACAAGC CAATGCCCCGGGGTGAGGTTGTAGTTGGGGGATTCAGCGTGACTGCCGGTTACTTCAACTACCAAGAAAAGACTAATGAGGTCTACAAGGTTGATGAAAG GGGCATGCGTTGGTTCTATACTGGCGACATTGGGCAGTTTCACCCTGATGGATGCCTTGAAATTATTGATAGGAAGAAGGATATCGTCAAACTTCAACAT GGAGAATATATCTCTCTTGGAAAGGTGGAGGCAGCATTAACGTCGAGTGACTATGTTGATAATATCATGGTACATGCAAATCCCTTCCACAACTATTGTG TTGCCCTAATTGTTCCATCCCGTCGCATGCTTGAGAAGTGGGCCCAGGAAGCTGGCATCCAGCACCAAAACTTTTCTGAACTGTGTAACGAAGCCGATGC TGTCAGTGAGGTTGAACAATCACTTTCCAAGGTAGCAAAAGCTTCGAGGTTGGACAAGTTTGAAACTCCAGCTAAGATCAAGTTGCTGCCAGATCCGTGG ACACCCGAGTCTGGCTTGGTTACTGCTGCCCTCAAGATAAAGAGGGAGCAGCTGAAGTCCAAATTTAAAGATGAGCTCCAGAAACTGTACGAGTGA
AA sequence Show only first row Show all	>Potri.014G169400.8 pacid=42762404 polypeptide=Potri.014G169400.8.p locus=Potri.014G169400 ID=Potri.014G169400.8.v4.1 annot-version=v4.1 MADSEGSFPSSPVLDKLDSNDYSSVGKGYGTYGIVGAAAVAILIPILLSTIFMGKKKVKQRGVPVEVGGEAGYAVRNARHAELVEVPWKGATTMAALFEQ SCRKHSPERFLGTRKLISKEFVTASDGRKFEKLHLGDYEWQTYGQVFDRVCNFASGLIMLGHNEDTRAAIFADTRAEWLIAFQGCFRQNITVVTIYASLG VDALIHSLNETQVSTLICDPKQLKTLAAISSKITTIKNVIYFEDGETTNDLGLSASTSYWKVSSFSEVEELGKNSHVPPSLPTKNGIAVVMYTSGSTGQP KGVMITHGNIVATAAAVMTVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCAIGYGSALTLTDTSNKIKKGTKGDASMLNPTLMPAVPAILDRVRDGV LKKVEEKGGLAKKLFNIGYKRKMAAIEGSWFGASGLERMLWDVIAFKQIRAILGVRMRFILCGGAPLSADSQRFTNICMGAIIGQGYGLTETCAGAAFTE WDDPSVGRVGPPLPCCYIKLVSWEEGGYTVADKPMPRGEVVVGGFSVTAGYFNYQEKTNEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQH GEYISLGKVEAALTSSDYVDNIMVHANPFHNYCVALIVPSRRMLEKWAQEAGIQHQNFSELCNEADAVSEVEQSLSKVAKASRLDKFETPAKIKLLPDPW TPESGLVTAALKIKREQLKSKFKDELQKLYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	0	1
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	1.41	0.7506
AT5G41620			unknown protein		Potri.003G135000 [exp]	6.32	0.6886
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	7.34	0.6744	RHEL901,SDE3.1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G136000 [exp]	8.24	0.6247
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	9.21	0.6515	AGO903,AGO4.1
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	11.22	0.6486
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	15.49	0.6263
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	17.94	0.6109
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	21.02	0.6310
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	22.13	0.6331

Compare expression of checked genes

Potri.014G169400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.