Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04350 866 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 773 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT5G27600 326 / 7e-103 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 301 / 1e-93 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT1G49430 288 / 5e-89 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G23850 286 / 5e-88 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 283 / 5e-87 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 278 / 3e-85 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 264 / 1e-79 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 147 / 3e-37 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169400 [exp] 1127 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 777 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 744 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.013G021300 [exp] 328 / 1e-103 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 315 / 1e-98 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 308 / 2e-96 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 298 / 8e-93 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 280 / 6e-86 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 240 / 5e-71 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016083 [exp] 911 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 903 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10018178 [exp] 770 / 0 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10025657 [exp] 766 / 0 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 733 / 0 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 730 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016085 [exp] 545 / 0 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 329 / 5e-104 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 327 / 3e-103 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 315 / 8e-99 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.014G169600.3 pacid=42763793 polypeptide=Potri.014G169600.3.p locus=Potri.014G169600 ID=Potri.014G169600.3.v4.1 annot-version=v4.1 ATGTTAGGGCATAATGAGGATGCTCGTGCTGCAATTTTTGCTGATACTCGGGCTGAGTGGTTGATTGCCTTTCAGGGATGCTTTCGGCAGAACATTACTG TTGTCACTATGTATGCTTCTCTAGGTGTGGATGCTTTGATCCATTCCCTCAATGAGACTCAAGTATCTACCCTGATCTGTGATCCCAAGCAGTTGAAAAC GCTAGCTGCAATAAGCTCAAAAATAACAACTATTAAGAATGTCATTTACTTTGAAGATGGAGAAACTACAAATGATTTGGGCTTATCTGCGAGCACAAGC TATTGGAAGGTTTCATCTTTTTCTGAAGTTGAGAAACTAGGGAAGAACAGTCCTGTTCCTCCAAGCTTACCTACAAAGAATGGAATTGCTGTTGTTATGT ACACAAGTGGCAGTACAGGCCAGCCAAAGGGAGTCATGATTACTCATGGCAACATTGTAGCCACTGCTGCAGCTGTTATGATGGTGATTCCAAAACTGAG TAGCAATGATGTATATTTGGCTTATTTGCCCCTAGCCCATGTTTTTGAACTGGCAGCTGAGTCTGTAATGTTGTCTGTAGGTTGTGCTATTGGCTATGGT TCGGCATTGACTTTGACAGACACATCTAACAAAATTAAGAAAGGAACCAAGGGTGATGCATCTATATTAAATCCTACTCTCATGATAGCTGTTCCAGCCA TACTAGATCGTGTCCGGGATGGAGTTCTAAAAAAGGTTGAGGAGAAGGGAGGGTTAGCAAAGAAGCTTTTCAACATTGGATGTAAGCGCCGAATGGCAGC CATAGAAGGAAGCTGGTTTGGTACTTCGGCACTGGAGAGAATGCTGTGGGATGTCATTGCCTTCAAACAAATACGTGCTATACTTGGAGTTCGTATGCAA TTCATCCTATGTGGCGGAGCCCCTTTATCTGGGGATTCACAACGGTTCACCAACATCTGCATGGGGGCTATAATTGGTCAAGCATATGGGTTGACAGAAA CATGTGCTGGAGCTGCTTACACTGAGTGGGATGACCCATCCGTGGGCCGTGTTGGACCTCCTCTTCCATGTTGCTACGTTAAGCTTGTTTCTTGGGAAGA AGGTGGGTATACAGTAGCCGACAAGCCAATGCCCCGGGGTGAGGTTGTAGTTGGGGGATTCAGCGTGACTGCCGGTTACTTCAACTACCAAGAAAAGACT AATGAGGTCTACAAGGTTGATGAAAGGGGCATGCGTTGGTTCTATACTGGCGACATTGGGCAGTTTCACCCTGATGGATGCCTTGAAATTATTGACAGGA AGAAGGATATCGTCAAACTTCAACATGGAGAGTATATCTCTCTTGGAAAGGTGGAGGCAGCATTAACATCGAGTGACTATGTTGATAATATCATGGTACA TGCAAATCCCTTCCACAACTATTGTGTTGCCCTAATTGTTCCATCACATCGCATACTTGAGAAGTGGGCCCAGGAAGCTGGCATCCAGCACCAGAACTTT TCTGAACTGTGTAACGAAGCCGATGCTGTCAGTGAGGTTGAACAATCACTTTCCAAGGTAGCAAAAGCTTTGAGGTTGGACAAGTTTGAAACTCCAGCTA AGATCAAGTTGCTGCCAGATCCATGGACACCCGAGTCTGGCTTGGTTACTGCCTCCCTCAAGATAAAGAGGGAGCAGCTGAAGTCCAAATTTAAAGATGA GCTCCAGAAACTGGGTGAGTGA
AA sequence Show only first row Show all	>Potri.014G169600.3 pacid=42763793 polypeptide=Potri.014G169600.3.p locus=Potri.014G169600 ID=Potri.014G169600.3.v4.1 annot-version=v4.1 MLGHNEDARAAIFADTRAEWLIAFQGCFRQNITVVTMYASLGVDALIHSLNETQVSTLICDPKQLKTLAAISSKITTIKNVIYFEDGETTNDLGLSASTS YWKVSSFSEVEKLGKNSPVPPSLPTKNGIAVVMYTSGSTGQPKGVMITHGNIVATAAAVMMVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCAIGYG SALTLTDTSNKIKKGTKGDASILNPTLMIAVPAILDRVRDGVLKKVEEKGGLAKKLFNIGCKRRMAAIEGSWFGTSALERMLWDVIAFKQIRAILGVRMQ FILCGGAPLSGDSQRFTNICMGAIIGQAYGLTETCAGAAYTEWDDPSVGRVGPPLPCCYVKLVSWEEGGYTVADKPMPRGEVVVGGFSVTAGYFNYQEKT NEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALTSSDYVDNIMVHANPFHNYCVALIVPSHRILEKWAQEAGIQHQNF SELCNEADAVSEVEQSLSKVAKALRLDKFETPAKIKLLPDPWTPESGLVTASLKIKREQLKSKFKDELQKLGE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169600 [exp]	0	1
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	6.48	0.8648	ATKEA4.2
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	7.07	0.8730
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	10.67	0.8744
AT3G48210			unknown protein		Potri.012G088000 [exp]	11.48	0.8262
AT2G28580			Plant protein of unknown funct...		Potri.014G054200 [exp]	14.86	0.7640
AT1G71090			Auxin efflux carrier family pr...		Potri.008G127700 [exp]	15.87	0.8395
AT1G56230			Protein of unknown function (D...		Potri.013G013000 [exp]	16.06	0.8510
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	17.49	0.8321	Pt-PGP1.1
AT2G38430			unknown protein		Potri.019G030050 [exp]	19.49	0.8510
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	22.64	0.8453

Compare expression of checked genes

Potri.014G169600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.