Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07660 491 / 8e-161 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 93 / 2e-19 GIP1 GBF-interacting protein 1 (.1) AT3G13990 87 / 2e-17 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT1G55820 85 / 1e-16 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 81 / 2e-15 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 76 / 7e-14 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 76 / 7e-14 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 71 / 2e-12 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G217000 [exp] 1210 / 0 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 195 / 5e-52 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 189 / 4e-50 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 118 / 6e-27 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 102 / 4e-22 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.011G078800 [exp] 90 / 3e-18 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 88 / 1e-17 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 74 / 3e-13 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036414 [exp] 827 / 0 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 815 / 0 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 99 / 8e-21 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10037658 [exp] 85 / 2e-16 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10004604 [exp] 85 / 2e-16 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 80 / 7e-15 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 77 / 6e-14 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 56 / 1e-09 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 59 / 1e-08 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 56 / 1e-07 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G169900.1 pacid=42762569 polypeptide=Potri.014G169900.1.p locus=Potri.014G169900 ID=Potri.014G169900.1.v4.1 annot-version=v4.1 ATGAGCGGTGGTGGGGTTAGGGTTTCAATCCCGAGCAACGCGAGGAAGACGATCCAGAACATCAAGGAGATCGCAGGAAATCACAGTGACGAGGAGATTT ATGCAATGCTCAAGGAGTGCTCTATGGATCCCAATGAAACCGCTCAAAAACTTCTCTCTCAAGATCCATTTCACGAAGTCAAAAGGAAGCGTGACAGGAA AAAAGAGAATGCGCACAACAGAGAGTCTGGAGATTCTCGATGGAGGTCTGGTTCACAGGGGCGGGTGAGTAGAGGCAGTCGCACGATCTTCTCACCTCGT CGCACAGCACATGATACTGGTGGTGGAAGGAACTCTGCTGCTGGAAGGGACAATGGAATCAGCCATGCTGCAGAGAAGGGCACTGGCTCTTCTTTGTCAG CCTCAGAAGAGAAAAGCAAAGAAACTACTGCATCAGCAAGCTTGTCTGCAGTTGTGGCCAATGGTCCAACTGGTGTAGTTTCTGGAAACTCTAGTGCAAC CCATGCCTCAAATTTACCTACAGGAAGCGATCAACATGAAGTGGCTCCGTCACCTATTGGTGTTAATAATGTGGGAAAGGAAGTGTCCCGCATTGATGTT GATAATACCCCAACTATTGCATTTGGAACTGGGGACACATGCAAGGAGTCCGTGCCAAGCTCTAGTAACTCCTCCATGTCTGTGACTCCAGCATCTTCAT CAACAGTCTGCTTCTCATTGTCAGATCCTGTACTGATACCTTCTAATGAATTGCATCCTCCTGGTACTGTGGGTGCAATTAAACGTGAAGTGGGGATTCA TCGAACTGTGGGTGAATCAAATGCAGTTATTCCTTCGGAGAAATCAGCTTCCGAGATTGGCCTTCCATTTATGCAAGGGAAGCTGCCAAGCAAAAACCAA GGAGTTGGGAAGAACCAGCTCAGCGAGTCTTCCCAGCCTTCATCTGCATCAATCCAGGGTGGCTCTTCTGGCAGCCGGCCTTCCTCTAACTACAGTAGCA GGTCACAACAAATTGGCCCACAAAAAGTTGGCTCTAATAAAGAGTGGAAACCAAAGTCCACAAACCCTAATGTAGCACAGGAGTCTGGAACAGCGGGTTT ATCTGCCATCTCTAATATTCCACTTGAAGCCAGTGGCCATTCACAGCCCTCATCAGGTGTCTTTGATTCAGAAGAAGCAACTGCTAAACTGCAGAAGAAG CTGGAGGAGTTGCATCTTCCCCAGCGTCAAAATGTTATCATTCCTCACCATATCCATGTTCCTGAATCTGAGAGAACAAAATTGAGTTTTGGAAGTTTTG ATGCTAGTTTTGGGGTGCCATCATGCCATGTTAGCCCCCCCGAGAGTGATAAGAGTTCCACACCTGTGTCTGAAACTTCTCAGGTTATTGAAGAATCTGT GGAGGAACAAGCTCAAAGCAAACAAAATACACTGTTGACTGCTGAGGAGGGAAATTATCCTGATCATCCACAGTCGCCTTCACATGTCCCTGGAAAATTA TCAGCTGAGGGTGATGTTTCATCCAATGCAGTGCCTGATTATGAGTCCAAACAGGAGGCTGCATTGTTGTCTGGAGGCCATCAATACTCGGTGGTTCATA CTTCTCCAAGCTACAGTTTTGGATTTGTTCCTCCAATGTTAGGTAGTCAGATTGCACCATTTGAGAACTCAGAATCTCAAGCACGTGATGTTTCTCGCCT TCCCAGCTTTGTGGTCCAGCAACCATTTGACCCTACAAGTTATTACGCCCAATTTTATCGTTCAAGTGCTGATAGTGATGGTCACGTTTCTCCCTTTCCT GCACCTGGAGTTGCATCCAAGTACAATGGAAATGTTGCAGTATTGCCTCCTCATACTTCTCAGTCTCTCCAAGAGGGTGGGAATTCTTTAGTTCTTTCCA CTGCTGGTCCCACTCCTCTGGTGACCCAAGCACCTGGGCTCATGCAAACTCAGCAACCTGTCCCTGTCTTCCGTCCACCGACTGGGTTGCACATATCCCA TTTCCCCCCGAACTACATCCCATATGCCCCCTACTTCTCCCCTTATTATGTCCCTCCTCCAAGCATCCACCAATTCTTAAGCAATGGTGCATTCCCACAG CAACCTCAAGCTGGCAGTGTGTATCCTGCACCAGCATCTGCAGCAGCCACAGGGGTCAAATATTCACTGCCGCAATACAAACCTGGAACTAACACAGTAA ATGCAACTCACATTGGAATGCCAAGTGGTTATGGACCATATGGTTCCTCTCCTACAGGTTATAATCCCAATTCTGCGGTGACGGGAGGAAACACAACCAC AAATGAGGATCTTGGTGCATCTCAGTTCAAGGAAAATAATGTTTACATTACCGGGCAGCAGAGTAGTGAGGGTTCGGCTGTGTGGATTGCTGCTCCTGGC CGAGACATATCTGGCTTGCCAGCAAGTTCCTTCTACAACCTTCCTCCTCAAGGTCAGCATGTGACTTCTGCACCAACTCAGGCTGCCCATGGCACCTATA CCAATATCTATCACCCTGGGCAACCAGTGACCGCAGCAGCTGTTCACCCACTCCTGCAACAGTCTCAGGCCATGGGTGGAGCTGTTGATATGGTAGGACC TGCAGCCAATGTTTACCAGCAGCCCCAGCATCAACAGATCAACTGGCCTGGCAACTACTGA
AA sequence Show only first row Show all	>Potri.014G169900.1 pacid=42762569 polypeptide=Potri.014G169900.1.p locus=Potri.014G169900 ID=Potri.014G169900.1.v4.1 annot-version=v4.1 MSGGGVRVSIPSNARKTIQNIKEIAGNHSDEEIYAMLKECSMDPNETAQKLLSQDPFHEVKRKRDRKKENAHNRESGDSRWRSGSQGRVSRGSRTIFSPR RTAHDTGGGRNSAAGRDNGISHAAEKGTGSSLSASEEKSKETTASASLSAVVANGPTGVVSGNSSATHASNLPTGSDQHEVAPSPIGVNNVGKEVSRIDV DNTPTIAFGTGDTCKESVPSSSNSSMSVTPASSSTVCFSLSDPVLIPSNELHPPGTVGAIKREVGIHRTVGESNAVIPSEKSASEIGLPFMQGKLPSKNQ GVGKNQLSESSQPSSASIQGGSSGSRPSSNYSSRSQQIGPQKVGSNKEWKPKSTNPNVAQESGTAGLSAISNIPLEASGHSQPSSGVFDSEEATAKLQKK LEELHLPQRQNVIIPHHIHVPESERTKLSFGSFDASFGVPSCHVSPPESDKSSTPVSETSQVIEESVEEQAQSKQNTLLTAEEGNYPDHPQSPSHVPGKL SAEGDVSSNAVPDYESKQEAALLSGGHQYSVVHTSPSYSFGFVPPMLGSQIAPFENSESQARDVSRLPSFVVQQPFDPTSYYAQFYRSSADSDGHVSPFP APGVASKYNGNVAVLPPHTSQSLQEGGNSLVLSTAGPTPLVTQAPGLMQTQQPVPVFRPPTGLHISHFPPNYIPYAPYFSPYYVPPPSIHQFLSNGAFPQ QPQAGSVYPAPASAAATGVKYSLPQYKPGTNTVNATHIGMPSGYGPYGSSPTGYNPNSAVTGGNTTTNEDLGASQFKENNVYITGQQSSEGSAVWIAAPG RDISGLPASSFYNLPPQGQHVTSAPTQAAHGTYTNIYHPGQPVTAAAVHPLLQQSQAMGGAVDMVGPAANVYQQPQHQQINWPGNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07660			Kinase-related protein of unkn...		Potri.014G169900 [exp]	0	1
AT2G45000		EMB2766	EMBRYO DEFECTIVE 2766, structu...		Potri.014G057000 [exp]	1.00	0.9234
AT1G75200			flavodoxin family protein / ra...		Potri.002G260700 [exp]	2.44	0.8957
					Potri.011G073666 [exp]	9.21	0.8890
AT2G27460			sec23/sec24 transport family p...		Potri.009G163300 [exp]	10.67	0.8001
AT1G09680			Pentatricopeptide repeat (PPR)...		Potri.017G131400 [exp]	12.16	0.8212
					Potri.011G162912 [exp]	12.32	0.8890
AT5G51300			splicing factor-related (.1.2....		Potri.001G126400 [exp]	15.65	0.8742
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	18.33	0.8378
					Potri.019G025833 [exp]	19.44	0.8712
					Potri.003G010631 [exp]	20.24	0.8705

Compare expression of checked genes

Potri.014G169900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.