Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12710 422 / 6e-147 ARM repeat superfamily protein (.1) AT3G03440 209 / 5e-64 ARM repeat superfamily protein (.1) AT5G14510 156 / 2e-44 ARM repeat superfamily protein (.1) AT3G01400 135 / 2e-36 ARM repeat superfamily protein (.1) AT5G58680 129 / 8e-34 ARM repeat superfamily protein (.1) AT3G54790 132 / 2e-33 ARM repeat superfamily protein (.1.2) AT2G23140 131 / 3e-33 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT4G16490 124 / 3e-31 ARM repeat superfamily protein (.1) AT5G67340 124 / 9e-31 ARM repeat superfamily protein (.1) AT3G46510 112 / 6e-27 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128100 [exp] 264 / 2e-85 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.004G088800 [exp] 263 / 1e-84 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 197 / 3e-60 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.002G037700 [exp] 144 / 2e-37 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 139 / 8e-36 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 129 / 2e-32 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.014G016400 [exp] 125 / 2e-32 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 128 / 3e-32 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.016G010800 [exp] 126 / 3e-32 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041090 [exp] 477 / 2e-169 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 476 / 8e-161 AT2G04280 828 / 0.0 unknown protein Lus10033593 [exp] 232 / 7e-72 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 225 / 7e-70 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10002521 [exp] 195 / 4e-59 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10022275 [exp] 188 / 2e-56 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10024899 [exp] 139 / 1e-35 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 133 / 1e-35 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10022919 [exp] 136 / 5e-35 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 127 / 9e-33 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G170100.2 pacid=42764640 polypeptide=Potri.014G170100.2.p locus=Potri.014G170100 ID=Potri.014G170100.2.v4.1 annot-version=v4.1 ATGGGCGAGGAAGAGGAAGAAGAGGAGACAACAGTAAAAGTATCGAGTAACCAAGAAGAAGAGGCATGGAACCTGAGGAAGCAAACCCAGATAGTGGAAT TATCAGAGAGACTCATGAGTGGAGATCTCAAAACCCAAATAGAAGCAGCCAGAGACATAAGGAAGCTCGTCAGGAAATCATCTGCAAAGACTCGCACCAA ACTTGCAGCTGCTGGGGTTATTCAGCCTCTCATTTTTATGCTTCTCTCTCCCAACTTTGATGCCCGCCATGCCTCTCTTCTTGCTCTCCTCAATCTCGCT GTTAGAAATGAACGAAATAAGGTGAAGATAGTGACAGCTGGTGCTGTCCCCCCGCTTGTGGAACTTCTCAAGTTGCAGAATGGTAGTTTAAGGGAATTAG CTGCTGCTTCCATATTGACACTGTCGGCTGCTGAACCTAACAAACCAATCATTGCAGCTTCTGGAGCTGCACCCCTTCTGGTTCAGATCCTCAGCTCTGG GAGTGTTCAAGGGAAAGTTGATGCTGTCACAGTCCTACACAACCTCTCCTCCTGTGCTGAGAATATACATCCTATTGTGGATGGTAAAGCAGTTTCCCCT CTCATCAACCTCCTCAAAGAATGCAAGAAATATTCCAAGTTTGCCGAGAAAGCTACAGCCCTGCTTGAAATCCTCTCAAACTCTGAAGAAGGACGAATTG CCATCACAGACTCAGATGGCGGGATTTTAACGTTAGTAGAAACTGTTGAAGATGGATCACTTGTTAGTACAGAACATGCTGTTGGAGCTTTGCTCTCTTT GTGCCAGAGCTGCCGAGAAAAGTATAGGGAACTAATTCTTAAAGAGGGTGCAATCCCAGGTCTTCTGCGACTGACAGTGGAGGGGACCTCTAAAGCTCAA GATAGAGCTCGTACTCTTTTAGACTTGCTCAGAGATACACCTCAGGAGAAGAGATTGTCATCGTCAGTGTTGGAGAGAATTGTCTACAACATTGCTACAC GAGTTGATGGCTCAGATAAAGCTGCTGAAACTGCCAAGAGGTTGCTACAAGACATGGTTCAAAGAAGTATGGAGCTCAGCATGAACAGCATCCAGCATAG GGCCGCATCATGTACACCTTCAAAGATTCCATCTAAATAA
AA sequence Show only first row Show all	>Potri.014G170100.2 pacid=42764640 polypeptide=Potri.014G170100.2.p locus=Potri.014G170100 ID=Potri.014G170100.2.v4.1 annot-version=v4.1 MGEEEEEEETTVKVSSNQEEEAWNLRKQTQIVELSERLMSGDLKTQIEAARDIRKLVRKSSAKTRTKLAAAGVIQPLIFMLLSPNFDARHASLLALLNLA VRNERNKVKIVTAGAVPPLVELLKLQNGSLRELAAASILTLSAAEPNKPIIAASGAAPLLVQILSSGSVQGKVDAVTVLHNLSSCAENIHPIVDGKAVSP LINLLKECKKYSKFAEKATALLEILSNSEEGRIAITDSDGGILTLVETVEDGSLVSTEHAVGALLSLCQSCREKYRELILKEGAIPGLLRLTVEGTSKAQ DRARTLLDLLRDTPQEKRLSSSVLERIVYNIATRVDGSDKAAETAKRLLQDMVQRSMELSMNSIQHRAASCTPSKIPSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	0	1
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	1.73	0.9005
AT5G11580			Regulator of chromosome conden...		Potri.018G044400 [exp]	2.00	0.8860
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	4.58	0.8837
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	5.47	0.8730
AT5G24690			Protein of unknown function (D...		Potri.001G210500 [exp]	7.34	0.8666
AT4G10270			Wound-responsive family protei...		Potri.019G116800 [exp]	8.30	0.8485
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	11.22	0.8721
					Potri.018G114801 [exp]	13.03	0.8409
AT2G15530			RING/U-box superfamily protein...		Potri.011G103301 [exp]	17.32	0.8651
AT3G11890			Sterile alpha motif (SAM) doma...		Potri.006G198500 [exp]	17.40	0.8140

Compare expression of checked genes

Potri.014G170100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.