Plant FIBer expression Database

Potri.014G170200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04280 862 / 0 unknown protein
AT4G12700 848 / 0 unknown protein
AT4G08810 498 / 1e-171 SUB1 calcium ion binding (.1)
AT3G56750 76 / 1e-14 unknown protein
AT2G41150 75 / 3e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G005500
[exp]
532 / 0 AT4G08810 762 / 0.0 calcium ion binding (.1)
Potri.003G219200
[exp]
255 / 9e-79 AT4G08810 451 / 1e-155 calcium ion binding (.1)
Potri.016G035600
[exp]
84 / 4e-17 AT3G56750 549 / 0.0 unknown protein
Potri.006G040400
[exp]
75 / 3e-14 AT3G56750 567 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036415
[exp]
890 / 0 AT2G04280 828 / 0.0 unknown protein
Lus10041091
[exp]
814 / 0 AT2G04280 745 / 0.0 unknown protein
Lus10039176
[exp]
535 / 0 AT4G08810 845 / 0.0 calcium ion binding (.1)
Lus10013761
[exp]
524 / 0 AT4G08810 836 / 0.0 calcium ion binding (.1)
Lus10039175
[exp]
334 / 1e-111 AT4G08810 463 / 5e-163 calcium ion binding (.1)
Lus10018111
[exp]
87 / 6e-18 AT2G41150 555 / 0.0 unknown protein
Lus10008860
[exp]
85 / 2e-17 AT2G41150 545 / 0.0 unknown protein
Lus10023250
[exp]
84 / 7e-17 AT2G41150 547 / 0.0 unknown protein
Lus10022403
[exp]
81 / 4e-16 AT2G41150 560 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G170200.1 pacid=42763586 polypeptide=Potri.014G170200.1.p locus=Potri.014G170200 ID=Potri.014G170200.1.v4.1 annot-version=v4.1
ATGTTGGGTCGGTCGACGTTATCAAGAAGTGGAAGCTTCAGACCAGAAAACATAGGCCAAAATGCTTTAGCCATGATAGGAAATCTCTGCTTCACTTTCT
TTGTTATCGGGGTTCTCATTTTCACCATCATCGCTGCTACTTACGAGCCTGAGGACCCTCTGTTTCACCCTTCGACAAAGATCACTAGTTTCCTCACTTC
CAATTCCAATGCCACCTTCAAATCTGGCGACACTGTTGTCAGAACTGGGGAGGATTTCATGGCCCCAAATCAGACTGCTTTTTCCAATTTCATCAACATT
ACTGATGTTGACACCACCCCCAGCATTGCTAGTGTTAATGCTGATGATGGTAATGTTAATCCTGATGGTGCCGCTACGACGGCTTCGGAGACCTGTGAAG
GTCCCTTGGACTGTAGGGATCCTGAATTGTTTCATATGTTGATGAAAAGGGTGATTGAGGAATTTAAGGATATGCATTTTTATCGGTTTGGGAAGCCTGT
TTCTGGGTCTAATGATTCTACTTGTGATATGGGTTGGAGGTTTAGGCCCAAGGAAGGCAAAACTGCTGCTTTTTATAAGGATTATAGGCGATTTGTTATA
GCTAGGTCGGAGAATTGTACGCTTAGTGTTGTGGGGATTGGGGACTATCATTCGGGTGTGAATGCTAGGAAGAAGAAGAAGAATCAGAAACCTGGGTTTG
AGAAAACACCAGGGAAACAAGAAGCGGGACAGCCCTTGTTGCCTGTTGTTGGGGAGGCTGTGAATGACGCGCTTCCGGTGGTTGAGTCGGAGAATTCGTT
TAGTCGCGGGAAGTATTTGCTTTATAATGGTGGAGGTGATAGATGTAAGAGTATGAATCATTACCTGTGGAGTTTCTTGTGTGCTTTGGGTGAAGCACAG
TATCTGAATCGGACACTGGTTATGGATCTGTCTCTTTGTTTGAATTGGATGTACTCTTCTTCAAATCAGGATGAGGAAGCAAAAGATTTTAGGTTTTATT
TTGATTTTGAGCATTTGAGGGAAGCTGCATCGGTTTTGGACCACTCTCAGTTTTGGGATGATTGGGATAAATGGCATAAAAAAGACCGGTTGAGTCTTCA
TCTCGTCGAGGATGTCAGGGTCACGCCTATGAAGCTTACAAGTGTAAAAGATACTTTGATTATGAGGAAGTTTGGATCTGTTGAACCTGATAATTACTGG
TACAGAGTGTGTGAAGGAGAGACCGAGGCTGTCATTCAAAGGCCGTGGCATCTGATATGGAAATCAAGGAGGTTGATGGATATTGTGAGTACAATTGCCT
CGAAATTGAACTGGGATTTTGATGCTGTTCATATTGAGAGAGGGGAGAAGGCAAGGAACAAGGAGCTGTGGCCTAATCTTGCAGCGGATACCTCTCCCGA
CGCGCTTCTCTCAACCTTGGCTAACAAACTTGAAGAGGGGAGGCACGTCTACATTGCGACAAATGAACCTGACACATCCTTCTTTGACCCTTTAAAGGAC
AAGTATACTACCCATTTTCTCGACGAGTATAAAGATCTCTGGGACGAGAACAGCGAGTGGTATTCGGAGACGAAGGCCCTTAACAAAGGTGTTCCAGTTG
AATTTGATGGTTATATGAGGATTTCTGTTGACACAGAAGTCTTCTTGAGAGGAAAAAAGCAGATCGAGACTTTCAATGATCTCACAAACGATTGCAAAGA
TGGTGTTAACACTTGCAGTGCTGCTGCCAGTTAA
AA sequence
>Potri.014G170200.1 pacid=42763586 polypeptide=Potri.014G170200.1.p locus=Potri.014G170200 ID=Potri.014G170200.1.v4.1 annot-version=v4.1
MLGRSTLSRSGSFRPENIGQNALAMIGNLCFTFFVIGVLIFTIIAATYEPEDPLFHPSTKITSFLTSNSNATFKSGDTVVRTGEDFMAPNQTAFSNFINI
TDVDTTPSIASVNADDGNVNPDGAATTASETCEGPLDCRDPELFHMLMKRVIEEFKDMHFYRFGKPVSGSNDSTCDMGWRFRPKEGKTAAFYKDYRRFVI
ARSENCTLSVVGIGDYHSGVNARKKKKNQKPGFEKTPGKQEAGQPLLPVVGEAVNDALPVVESENSFSRGKYLLYNGGGDRCKSMNHYLWSFLCALGEAQ
YLNRTLVMDLSLCLNWMYSSSNQDEEAKDFRFYFDFEHLREAASVLDHSQFWDDWDKWHKKDRLSLHLVEDVRVTPMKLTSVKDTLIMRKFGSVEPDNYW
YRVCEGETEAVIQRPWHLIWKSRRLMDIVSTIASKLNWDFDAVHIERGEKARNKELWPNLAADTSPDALLSTLANKLEEGRHVYIATNEPDTSFFDPLKD
KYTTHFLDEYKDLWDENSEWYSETKALNKGVPVEFDGYMRISVDTEVFLRGKKQIETFNDLTNDCKDGVNTCSAAAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04280 unknown protein Potri.014G170200
[exp]
0 1
AT5G22740 ATCSLA2, ATCSLA... CELLULOSE SYNTHASE-LIKE A 2, A... Potri.009G149700
[exp]
3.00 0.8926 ATCSLA02.1
AT5G60920 COB COBRA-like extracellular glyco... Potri.015G060000
[exp]
4.89 0.8240
AT5G04160 Nucleotide-sugar transporter f... Potri.016G043200
[exp]
6.16 0.8889
AT5G45280 Pectinacetylesterase family pr... Potri.003G046200
[exp]
10.58 0.8184
AT5G06700 TBR TRICHOME BIREFRINGENCE, Plant ... Potri.006G193900
[exp]
11.48 0.8032
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.011G055236
[exp]
13.56 0.7944
AT4G28320 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl ... Potri.006G009400
[exp]
13.85 0.8121
AT3G62390 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 ... Potri.002G195800
[exp]
14.56 0.7878
AT2G44940 AP2_ERF Integrase-type DNA-binding sup... Potri.014G055700
[exp]
18.13 0.8336
AT2G46210 AtSLD2 sphingoid LCB desaturase 2, Fa... Potri.006G228200
[exp]
20.24 0.8308

Potri.014G170200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.