Plant FIBer expression Database

Potri.014G170300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04270 1009 / 0 RNEE/G RNAse E/G-like (.1.2.3.4.5)
AT5G01260 49 / 8e-06 Carbohydrate-binding-like fold (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G028900
[exp]
46 / 0.0001 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1)
Potri.016G114500
[exp]
45 / 0.0002 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041094
[exp]
1016 / 0 AT2G04270 957 / 0.0 RNAse E/G-like (.1.2.3.4.5)
Lus10036417
[exp]
995 / 0 AT2G04270 974 / 0.0 RNAse E/G-like (.1.2.3.4.5)
Lus10004826
[exp]
47 / 5e-05 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2)
Lus10002495
[exp]
47 / 8e-05 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0369 GHD PF00686 CBM_20 Starch binding domain
CL0369 PF10150 RNase_E_G Ribonuclease E/G family
Representative CDS sequence
>Potri.014G170300.7 pacid=42762722 polypeptide=Potri.014G170300.7.p locus=Potri.014G170300 ID=Potri.014G170300.7.v4.1 annot-version=v4.1
ATGGACATCTCCTCGGAGGCTCGGCCACCCCTCCACCTCCACCTCCACCTCCACCGCCCGCGCACGCCCTCATGCCACTTGTTTCATTTTTCACCCAGGC
ATGGCTTGTCTCGAAGAAATGTTGTCTTTAAAATCGCGCAGAATCCTCCTCCTCCTCCCCCACCCGCCCATGCCATATCTGCAAAGAAAGGAAATTATTC
AAATAATACTGTTTGTCAAGAAGGATTATGTGAGCTAGTTTGGACTGTAGAAGCTGATTTGGCACCTGGTCAGCTTCTTTACGTTACCGGGGATCCTGTT
GTATTAGGCTGTTGGGATCCGGAAATGGCTATCTTAATGCATCCCATTTCACATCCAAACTTGTGGGAAGCTCAAGTCACGGTACCTTGCGGTGTAAATT
TCAAGTATAATTATTTTGTAAGAGATAAAACATGGCCTTCATGCAATGTCACTTGGAGACCCGGACCTGAATTTTCTTTGTCAGTACCCGCGACTGTAAA
ACAAGATAGAAAAATTATGGTGAGGGATTCATGGACTAAGTTTAATACTGAGAGGTCTCCAGATTATTTATGGGGTTCATGGATAGAGGAGAGATATCTA
CCATTGGAACCTTCAAATTGTGCTCCAACCAGAGATGAACATGTGATTGCAAAACACCTTCAGATTGATTTCAAAGAGCCAAAGGCATTCCTGAATGATC
TCAAAGTCAACAATAAATCTCGCACCAACGATGAGGATTACCTAACAGCAACATATGATTGCCCAAACTCAGTTTTCCATGAAAGAGACCAACCTCTCGA
GGAACCCTGGTTACTCCAATCACCTGTTATCTCTGTTGTCTTTAAGGACAAATTGACACAAGATGTGTCAAAAAATAGTGACACTGTGGAAGATGGTCTG
AAGAAATTCAAGGTTAATGATCAGGGTATGAAAGTGAAAGACAAGTTGTCTGCTAATGGGAGCAATCTGAATTTGAAAGATGATTCAGTTTCTACTGTCA
TACTGATTAGTTCTTCAATATGTACAATGCAAAGGATAGCTGTATTGGAAGATGAGAAATTGGTTGAATTACTTCTGGAACCAGTTAAAAACACCGTGCT
CTGTGATAGTGTGTATATAGGGGTGGTCACAAAACTTGTCCCCCACATGGGTGGTGCATTTGTAAATATTGGGAGCTCAAGACCTTCTCTTATGGACATA
AAGCAAAACAGGGAACCATTCATATTCCCTCCATTTTGTCAGAGGACAAAGAAAGGAGAGGTCAATGGTTCTGTGCTCAAAGCCTTTGAAGAGCATCCTG
CTGCCCACGAAAATGAACACACATCACATGATGTTGAAGTCATTGACGATGTTTCAGAATTTGTCTTTCACAGTGATTTGGCACCATTTCTGCATGATGA
TCACGAGGAGCATGAAGTTGATGATGATTTTGATGTTTCAGAAGTTAAGGAAAATGTTAATGGCAGTATAGTTGATTATGGTGAAGTGGATGCTGATTTT
GAGCAGTTCCTCGATGGAAGGGAGCACCATTTGGAAGGTGACACTGCCAGCCGTTCTACAGTTGAAACAGAAGAACCTAACTATCCTCCAGTATCTCATC
AAGATATAAAGGATGCTAAGCATACATTAACTAGTGAAAACAAGTGGTCCCAAGTTCGTAAAGGCACAAAAGTAATTGTTCAAGTTGTCAAGGAGGGATT
GGGTACAAAAGGCCCAACAGTGACTGCTTATCCAAAACTAAGAAGCAGATTCTGGATATTGATCACACGTTGCGATAGAATTGGGGTTTCCAAAAAAGTT
TCTGGAGTTGAGCGTACACGCCTCAAAGTTATAGCAAAAACTTTGCAGCCACCAGGTTTTGGTCTAACTGTAAGAACTGTTGCTGCCGGTCATTCATTTG
AGGAATTGCAGAAGGACTTGGAAGGTTTGCTTTCAACTTGGAAAAGTATAATGGAACATGCAAAATCTGCTGCTCTTGCTGAAGATGAAGGTGTGGAGGG
GGCCATTCCTGTTGTACTGCACAGGGCAATGGGTCAAACGCTCTCTGTTGTCCAGGATTATTTTAGTGAAAAGGTTAGGAAAATGATGGTGGACTCTCCG
AGGACGTATCATGAGGTTACTAACTACCTCCAGGAAATTGCTCCTGATCTTTGTGGACGAGTCGAGTTGTATGATAAAAGAACTCCTCTTTTTGATGAAT
TCAAAATCGAAGAAGAGATCAATAATATCCTTAGTAAAAGGGTTCCACTATCTAGTGGAGGTTCTCTAGTGATTGAACAAACAGAGGCATTAGTCTCAAT
TGATGTGAATGGGGGACATGTAATGCTTCGTCAAAGGACTTCACAAGAGAAAGCCATTCTAGACGTCAACCTTGCAGCTGCAAAACGAATCGCAAGGGAG
TTACGGCTGAGAGATATTGGTGGTATAATTGTAGTAGACTTCATCGATATGGCAGATGAATCAAATAAGAGACTAGTTTATGAAGCAGTGAAGAGAGCTG
TTGAGAGAGACCGGTCAACAGTGAAGGTTTCTGAATTGTCAAATCATGGACTGATGGAAATAACAAGAAAGAGGGTTCGACCCAGTGTGACATTTATGAT
CAGTGAACCATGCACTTGCTGTCATGCGACTGGCAGAGTTGAAGCCTTAGAAACCTCCTTTTCTAAGATTGAACAAGAAATTTGTCGTTCGCTTGCAACG
ATGGACCAGAAGGCAGACCACGAAAACCCAAAGACCTGGCCAAGATTTATATTGAGGGTTGACCATCACATGTGTAACTACCTGACTTCAGGAAAAAGGA
CAAGGCTTGCAGTCTTGAGTAGTTCCCTCAAAGTTTGGATTCTTTTGAAGGTTGCTAGAGGTTTTACTAGAGGAGCATTTGAGGTGAAGCAATTTACAGA
TGACAAAACAAACAAAGATCAGCAACAGGTAGCTATATCAGTGCTCCGGCAAGCAGAGGCAAGAGCTAAAAAATCTGGAGGGAAAGTAACACTTGTTCCT
GTGAAAAAAGGAAAGGCTGGTCGCAAATGA
AA sequence
>Potri.014G170300.7 pacid=42762722 polypeptide=Potri.014G170300.7.p locus=Potri.014G170300 ID=Potri.014G170300.7.v4.1 annot-version=v4.1
MDISSEARPPLHLHLHLHRPRTPSCHLFHFSPRHGLSRRNVVFKIAQNPPPPPPPAHAISAKKGNYSNNTVCQEGLCELVWTVEADLAPGQLLYVTGDPV
VLGCWDPEMAILMHPISHPNLWEAQVTVPCGVNFKYNYFVRDKTWPSCNVTWRPGPEFSLSVPATVKQDRKIMVRDSWTKFNTERSPDYLWGSWIEERYL
PLEPSNCAPTRDEHVIAKHLQIDFKEPKAFLNDLKVNNKSRTNDEDYLTATYDCPNSVFHERDQPLEEPWLLQSPVISVVFKDKLTQDVSKNSDTVEDGL
KKFKVNDQGMKVKDKLSANGSNLNLKDDSVSTVILISSSICTMQRIAVLEDEKLVELLLEPVKNTVLCDSVYIGVVTKLVPHMGGAFVNIGSSRPSLMDI
KQNREPFIFPPFCQRTKKGEVNGSVLKAFEEHPAAHENEHTSHDVEVIDDVSEFVFHSDLAPFLHDDHEEHEVDDDFDVSEVKENVNGSIVDYGEVDADF
EQFLDGREHHLEGDTASRSTVETEEPNYPPVSHQDIKDAKHTLTSENKWSQVRKGTKVIVQVVKEGLGTKGPTVTAYPKLRSRFWILITRCDRIGVSKKV
SGVERTRLKVIAKTLQPPGFGLTVRTVAAGHSFEELQKDLEGLLSTWKSIMEHAKSAALAEDEGVEGAIPVVLHRAMGQTLSVVQDYFSEKVRKMMVDSP
RTYHEVTNYLQEIAPDLCGRVELYDKRTPLFDEFKIEEEINNILSKRVPLSSGGSLVIEQTEALVSIDVNGGHVMLRQRTSQEKAILDVNLAAAKRIARE
LRLRDIGGIIVVDFIDMADESNKRLVYEAVKRAVERDRSTVKVSELSNHGLMEITRKRVRPSVTFMISEPCTCCHATGRVEALETSFSKIEQEICRSLAT
MDQKADHENPKTWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKVWILLKVARGFTRGAFEVKQFTDDKTNKDQQQVAISVLRQAEARAKKSGGKVTLVP
VKKGKAGRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Potri.014G170300
[exp]
0 1
AT4G34830 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURAT... Potri.004G166600
[exp]
1.41 0.9511
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.003G140800
[exp]
3.74 0.9340
AT5G54090 DNA mismatch repair protein Mu... Potri.012G005000
[exp]
4.89 0.9336
AT1G53250 unknown protein Potri.011G112300
[exp]
6.00 0.9112
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.001G090800
[exp]
6.92 0.9253
AT1G10010 AAP8, ATAAP8 amino acid permease 8 (.1) Potri.013G103551
[exp]
7.74 0.8768
AT3G22470 Pentatricopeptide repeat (PPR)... Potri.013G034400
[exp]
8.00 0.8974
AT4G18240 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SY... Potri.001G351800
[exp]
8.36 0.9001
AT1G03160 FZL FZO-like (.1.2) Potri.005G209200
[exp]
8.71 0.9261
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Potri.007G123900
[exp]
9.21 0.9255

Potri.014G170300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.