Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-COL11.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07650 329 / 2e-110 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G48250 325 / 5e-109 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT4G15250 130 / 3e-34 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G21880 130 / 7e-34 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT2G33500 130 / 1e-33 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 126 / 4e-32 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT1G68190 117 / 3e-29 CO B-box zinc finger family protein (.1) AT2G47890 108 / 2e-27 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 83 / 3e-17 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 77 / 5e-16 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214500 [exp] 551 / 0 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.007G121200 [exp] 178 / 3e-51 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.017G039301 [exp] 174 / 8e-50 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.001G061800 [exp] 132 / 7e-34 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 132 / 2e-33 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 114 / 1e-28 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 114 / 4e-28 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.008G125200 [exp] 114 / 1e-27 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.001G323500 [exp] 103 / 7e-24 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036419 [exp] 336 / 1e-112 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 228 / 2e-71 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 129 / 4e-33 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 127 / 7e-33 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 123 / 2e-30 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 119 / 2e-29 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 117 / 2e-29 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10035257 [exp] 104 / 1e-24 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10039695 [exp] 100 / 9e-23 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10034625 [exp] 97 / 1e-21 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.014G170600.1 pacid=42763038 polypeptide=Potri.014G170600.1.p locus=Potri.014G170600 ID=Potri.014G170600.1.v4.1 annot-version=v4.1 ATGGGTTACGTTTGTGATTTTTGTGGGGAACAAAGGTCCATGGTTTATTGCCGGTCAGATGCTGCAAGCTTATGTTTATCATGCGATCGAAATGTTCATT CTGCTAATGCTTTGTCCAAGCGTCATTCACGGACCCTCTTATGTGAAAGATGCAATTCACAACCAGCGTTAGTTAGATGTGCTGAAGAAAGAATCTCTCT ATGTCAAAATTGTGATTGGATTGGCCATGGCACCTCGACATCAGCTTCCACACATAGAAGGCAAACGATCAATTCTTACTCTGGCTGTCCATCAGCTTCT GAGCTTTCTTCAATATGGTCATTTGTTTTAGACTTCCCTTCCAGAGGTGAATCTACTTGTGAGCAGGAGTTGGGTTTGATGAGCATTGCTGAAAATAGCA CCACAGACTCCTGGGGTCCTACAGAGAATACTATTGGCCAAAATGCATCTGGAGTTGTTGAAGTTAATGACAGGCGTGAAATAGCTAAATCAGGTGTTTG GCTTGGGTCTTCTTCGATACCTGAATCGAGCTCTGTGCCAAACAATCTAGACCAGACAACCAGATCCGCAAATACATCTTTGCCTAAGTTATGCTGTCCC GGGACTAAGTGTCCTGCACCCTACGAAGATGCTGATCTTTATGAGGACTTCAATATGGATGAAATGGATTTGAGTCTCGAAAACTATGAAGAACTCTTTG GTGTTACCCTCAATAATTCAGAAGAGCTTCTTGAGAATGGTGGCATTGATAGCTTATTTGGGACAAAGGACATGTCTGGTGCTGACTCCAGTTGTCAGGG TGCAGTTGCAGCTGAGGGGTCATCAGTTGGAGTGGTCAACGCCGTACAGCCAGCAAGCAGCAACGCAGCATCTGCTGATTCTATGATGAGCAATAAGACT GAACCAATCCTTTGTTTTACGGAAAAGCAAGGCCATTCCAGCCTCTCATTTTCTGGCCTTAATGTAGAGAGTAGTGCTGCAGATTATCAAGATTGTGGAG CATCTTCAATGCTTCTTATGGGAGAGCCTCCCTGGTGCCCCCCATGCCCCGAGAGTCCCTTCTCATCAGCTAACCGGAGTGATGCTGTAATGCGTTACAA GGAAAAGAAGAAGACACGGATGTTTGAAAAGAAAGTGAGGTATGCATCTCGCAAAGCAAGGGCAGATGTAAGAAGGCGTGTGAAGGGTCGTTTTGTCAAA GCTGGTGAAGCTTATGATTACGACCCACTTAGCCAAACGAGAAGTTTCTGA
AA sequence Show only first row Show all	>Potri.014G170600.1 pacid=42763038 polypeptide=Potri.014G170600.1.p locus=Potri.014G170600 ID=Potri.014G170600.1.v4.1 annot-version=v4.1 MGYVCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSKRHSRTLLCERCNSQPALVRCAEERISLCQNCDWIGHGTSTSASTHRRQTINSYSGCPSAS ELSSIWSFVLDFPSRGESTCEQELGLMSIAENSTTDSWGPTENTIGQNASGVVEVNDRREIAKSGVWLGSSSIPESSSVPNNLDQTTRSANTSLPKLCCP GTKCPAPYEDADLYEDFNMDEMDLSLENYEELFGVTLNNSEELLENGGIDSLFGTKDMSGADSSCQGAVAAEGSSVGVVNAVQPASSNAASADSMMSNKT EPILCFTEKQGHSSLSFSGLNVESSAADYQDCGASSMLLMGEPPWCPPCPESPFSSANRSDAVMRYKEKKKTRMFEKKVRYASRKARADVRRRVKGRFVK AGEAYDYDPLSQTRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	0	1	Pt-COL11.2
AT1G05700			Leucine-rich repeat transmembr...		Potri.019G094250 [exp]	2.00	0.9309
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	3.46	0.8859
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Potri.006G222000 [exp]	4.47	0.8778
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Potri.009G035000 [exp]	5.29	0.8851
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.009G032000 [exp]	7.34	0.8724
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	7.74	0.9098
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	7.74	0.9100
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	7.93	0.9118
AT5G36930			Disease resistance protein (TI...		Potri.011G012750 [exp]	9.64	0.8697
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	9.79	0.8961

Compare expression of checked genes

Potri.014G170600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.