Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26550 311 / 2e-108 Got1/Sft2-like vescicle transport protein family (.1) AT5G56020 304 / 2e-105 Got1/Sft2-like vescicle transport protein family (.1) AT5G24170 56 / 9e-10 Got1/Sft2-like vescicle transport protein family (.1) AT5G23550 52 / 3e-08 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164900 [exp] 298 / 3e-103 AT5G56020 325 / 5e-114 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 57 / 4e-10 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.001G467200 [exp] 42 / 2e-05 AT4G26550 72 / 9e-17 Got1/Sft2-like vescicle transport protein family (.1) Potri.004G135000 [exp] 42 / 0.0001 AT5G23550 224 / 1e-75 Got1/Sft2-like vescicle transport protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027128 [exp] 317 / 1e-110 AT4G26550 333 / 3e-117 Got1/Sft2-like vescicle transport protein family (.1) Lus10032895 [exp] 317 / 2e-107 AT4G26550 338 / 8e-116 Got1/Sft2-like vescicle transport protein family (.1) Lus10029537 [exp] 55 / 4e-09 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10039619 [exp] 54 / 9e-09 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [poplar] [flax] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Potri.014G170700.1 pacid=42764467 polypeptide=Potri.014G170700.1.p locus=Potri.014G170700 ID=Potri.014G170700.1.v4.1 annot-version=v4.1 ATGCAGAAAACGGCACAATCGTGGTTCACGGGAGGCCCAACCTTCAACGACCAAAAATCCTCCTCCTCCTCTTCCCCGTCTTTGCTATCAGATTGGAACG CTTACGCCGCTTCTCAGGAATCCGATTCCTCCGCTCCAGTTTTCGATCTCGAAGCCGCAGTCCGTACCACCAGCGACAAAGTATCCGGCACCTTCAACGT AGTTTCGAAAGGAGTCAGGGATTTACCCGGGAGTTTTCAGTCTTCCACTATCAATGTTCCTTCTGGACAATCTTTCGTGTACTTTGGTATACTACTTGCT GCTGGAGTGTTCTTTGTCTTTATTGCATTCACCATGTTCCTTCCTGTCATGGTGTTGGTGCCTCAGAAATTCGCAATCTGCTTTACTATTGGTTGTGCCT TAATCGTTGCTTCATTCTTTGCACTCAAAGGCCCTAAGAATCAGCTTGCCCACATGATTTCTAAAGAGAGGCTCCCTTTCACTTTGGGATTTATCAGTAC CATGGTAGGAACTGTATATGTTTCTATGGTGCTTCACAGTTACATCCTTTCTGTGCTCTTCTCCGTGTTACAGGTCCTCGCTCTATCGTATTATGCCATT TCTTATTTCCCTGGAGGATCTACTGGGCTGAAGTTTCTTTCTTCAACTCTTACCGCATCAATACTGAGATGTTTCGGAAGGTGA
AA sequence Show only first row Show all	>Potri.014G170700.1 pacid=42764467 polypeptide=Potri.014G170700.1.p locus=Potri.014G170700 ID=Potri.014G170700.1.v4.1 annot-version=v4.1 MQKTAQSWFTGGPTFNDQKSSSSSSPSLLSDWNAYAASQESDSSAPVFDLEAAVRTTSDKVSGTFNVVSKGVRDLPGSFQSSTINVPSGQSFVYFGILLA AGVFFVFIAFTMFLPVMVLVPQKFAICFTIGCALIVASFFALKGPKNQLAHMISKERLPFTLGFISTMVGTVYVSMVLHSYILSVLFSVLQVLALSYYAI SYFPGGSTGLKFLSSTLTASILRCFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.014G170700 [exp]	0	1
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	1.00	0.9137
					Potri.015G135100 [exp]	2.00	0.8828
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	12.12	0.8194
AT2G01720			Ribophorin I (.1)		Potri.008G038700 [exp]	12.24	0.8187
AT1G09270		IMPA-4	importin alpha isoform 4 (.1.2...		Potri.013G007300 [exp]	13.03	0.8724
AT1G10417			unknown protein		Potri.008G190600 [exp]	16.52	0.8692
					Potri.005G038600 [exp]	16.91	0.8397
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	17.02	0.8661
AT1G73240			unknown protein		Potri.003G213050 [exp]	17.29	0.8592
AT2G01818			PLATZ transcription factor fam...		Potri.008G137300 [exp]	19.36	0.8565

Compare expression of checked genes

Potri.014G170700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.