Plant FIBer expression Database

Potri.014G170800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12680 686 / 0 unknown protein
AT5G40640 379 / 1e-124 unknown protein
AT3G27390 376 / 1e-123 unknown protein
AT4G37030 355 / 1e-115 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G338900
[exp]
384 / 2e-126 AT5G40640 718 / 0.0 unknown protein
Potri.007G042400
[exp]
377 / 3e-124 AT4G37030 707 / 0.0 unknown protein
Potri.007G035400
[exp]
373 / 7e-123 AT4G12680 411 / 9e-138 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016056
[exp]
753 / 0 AT4G12680 749 / 0.0 unknown protein
Lus10025177
[exp]
745 / 0 AT4G12680 738 / 0.0 unknown protein
Lus10022317
[exp]
379 / 1e-124 AT3G27390 722 / 0.0 unknown protein
Lus10032110
[exp]
371 / 2e-121 AT3G27390 728 / 0.0 unknown protein
Lus10014575
[exp]
374 / 3e-121 AT5G40640 714 / 0.0 unknown protein
Lus10011021
[exp]
361 / 1e-117 AT4G37030 698 / 0.0 unknown protein
Lus10001003
[exp]
353 / 1e-114 AT4G37030 707 / 0.0 unknown protein
Lus10014881
[exp]
192 / 1e-55 AT3G27390 380 / 3e-128 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G170800.1 pacid=42763867 polypeptide=Potri.014G170800.1.p locus=Potri.014G170800 ID=Potri.014G170800.1.v4.1 annot-version=v4.1
ATGAAGGTTCCCGTTGGGTTTCTGGCTACCCTTTGGAGCTTCTTCTCCTTCTTGCCCTTCTTCTTCTTCCTCCTCATCCTTGGCCTTGCCAAAGCTGCGA
TAATTGGTCCAATCGCCCTGGGAATTATTGTGATCGGTAATTCAGCTGTGATCATTGGTCTTTGGATTGCTCATTTCCTGTACACTTACTATTGTGTGGC
AAGAACCAAGAGGCTCGGTTTTGTCCTGAAGATTGCGGTGCTTTTGCTGTTGCCTGTGCCCTTGGTCCTCTGGCCAGTCATTGGAATTGGCGGAAGCCTT
TTGGGTGGCATTGGATACGGGTTTTTTGCTCCTCTTCTTGCAACTTTTGAGGCTGTCGGGGAGAATGTCAAGGACAAATTCTACCACTGTTTTGCTGATG
GTTGCTTGCCCACTATCAAAGGTACCTGCACAGTAGTGTGCGATTTTACAGATTTTTGCTTCCATTCTTACTTCTCTTACATGGATGAACTATGTGAGAA
GGTCCCTCCAGAAGAGAAGCCGATGGATGTGAAGCTAGCAAAACTGCCAAGTTGCTTGTTGGTGATTCTGATCGCCGTGCCAGTTGATGTGCTTCTGATA
ACAGCTGTTGCTCTGTGGAAAAGCCCATACATGCTGTTTCGAGGATGGAAAAGGCTATTGGAAGATTTGATTGGTAGAGAAGGGCCATTCTTGGAGACGG
TATGTGTTCCATTTGCTGGTCTGGCCATCATCTTGTGGCCTTTAGCTGTTTTAGGAGCTGTAATAGGAGCTATCATATCCAGCTTCTTCCTGGCACTTTA
CAGTGGAGTGATTGTCCATCAGGAAGACTCCCTCCTGAAGGGGCTTGGCTACATCTTGGCTTTGGTTTCATTATTTGACGAGTATGTGAATGATTTTCTC
TACTTGAGGGAAGGATCATGCTTGCCAAGGCCTAGGTACCGTAAGAATGCAAATCCTAAGCCGGGAGAGGACAACAGCTTGAAGACTAGAAGAGAAAACT
CGCTCAATGCGCAACTCATCTCGCAAAAGTCAAGAACACTGAAGTGGGAAATCCAGCAATACAAAGCAGTGCAGGTTTGGGATTGGTTATTCAAAGCTTG
TGAGGTAAATGGTAGGATACTGCTTCGTGATGGCCTGATAAATATCCAGGAAATTGAAGAATGCCTTGTTAAGGGTAATTGTAAGAAGCTGAGCATCAAA
TTACCTACTTGGTCCGTACTACATTGTCTGCTTGTATCTGCGAAGTCTGACTCATCTGGGCTGGTGATCTCTGATGATGTAGAGTTGGAAAGAAACAATG
GACCAAGGGAGAAGGTGTTTGAGTGGTTAATCGAACCGTTATTGATTATGAAAGAGCAAATAAAGAATCTGAAAGTAGAAGAAAATGAAGAAACCTGTCT
GAAAAGGCTGGTTATTGAGTGCGAAAACAAGAGGCCCGAGGAGTGGGATGGAACTGGATTTCCATCCAATGACAATGTCAGAAGGGCACAGCTGCAAGCC
ATTATCAGAAGATTGCAAGGGATTGTAGCTTCCATGTCCCGGTTTCCGACCTTCCGGCGTCGCTTTAGGAACATGCTGAAGGTTTTGTATGTAGAGGCAA
TTCAGGCTGGTGCTTCAGCCAGTCATATTGGAGTAGCATTAAAATCCAAATACACTGGCAAGAGCTTGATTGAATCTGGGAGTGGAGAAGGTAGAAATGA
AACTGATGAGGTAGTTAATGAGGCATATGATAACGGGGATGTAGTATGA
AA sequence
>Potri.014G170800.1 pacid=42763867 polypeptide=Potri.014G170800.1.p locus=Potri.014G170800 ID=Potri.014G170800.1.v4.1 annot-version=v4.1
MKVPVGFLATLWSFFSFLPFFFFLLILGLAKAAIIGPIALGIIVIGNSAVIIGLWIAHFLYTYYCVARTKRLGFVLKIAVLLLLPVPLVLWPVIGIGGSL
LGGIGYGFFAPLLATFEAVGENVKDKFYHCFADGCLPTIKGTCTVVCDFTDFCFHSYFSYMDELCEKVPPEEKPMDVKLAKLPSCLLVILIAVPVDVLLI
TAVALWKSPYMLFRGWKRLLEDLIGREGPFLETVCVPFAGLAIILWPLAVLGAVIGAIISSFFLALYSGVIVHQEDSLLKGLGYILALVSLFDEYVNDFL
YLREGSCLPRPRYRKNANPKPGEDNSLKTRRENSLNAQLISQKSRTLKWEIQQYKAVQVWDWLFKACEVNGRILLRDGLINIQEIEECLVKGNCKKLSIK
LPTWSVLHCLLVSAKSDSSGLVISDDVELERNNGPREKVFEWLIEPLLIMKEQIKNLKVEENEETCLKRLVIECENKRPEEWDGTGFPSNDNVRRAQLQA
IIRRLQGIVASMSRFPTFRRRFRNMLKVLYVEAIQAGASASHIGVALKSKYTGKSLIESGSGEGRNETDEVVNEAYDNGDVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12680 unknown protein Potri.014G170800
[exp]
0 1
AT1G23070 Protein of unknown function (D... Potri.018G062600
[exp]
1.00 0.9120
AT2G38905 Low temperature and salt respo... Potri.008G044300
[exp]
2.82 0.9070
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Potri.016G046350
[exp]
5.47 0.8862
AT2G47770 ATTSPO TSPO(outer membrane tryptophan... Potri.002G206100
[exp]
8.48 0.8888
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Potri.013G148600
[exp]
17.02 0.7917
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Potri.001G151500
[exp]
17.32 0.8260 EXLB1.2
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Potri.012G082800
[exp]
18.70 0.8853
AT2G21820 unknown protein Potri.010G176200
[exp]
19.89 0.7777 PM41.1
AT5G50360 unknown protein Potri.015G091900
[exp]
20.24 0.8200
Potri.010G115900
[exp]
22.09 0.8672

Potri.014G170800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.