Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07620 571 / 0 Exostosin family protein (.1) AT5G03795 476 / 8e-165 Exostosin family protein (.1) AT5G11130 423 / 9e-145 Exostosin family protein (.1) AT5G25310 415 / 1e-141 Exostosin family protein (.1) AT3G42180 402 / 8e-137 Exostosin family protein (.1.3) AT5G20260 377 / 7e-127 Exostosin family protein (.1) AT5G33290 372 / 1e-124 XGD1 xylogalacturonan deficient 1 (.1) AT4G16745 348 / 2e-114 Exostosin family protein (.1.2) AT5G19670 326 / 3e-105 Exostosin family protein (.1) AT4G32790 325 / 4e-105 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171100 [exp] 530 / 0 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 511 / 7e-179 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 432 / 4e-148 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 427 / 3e-146 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 415 / 7e-142 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 414 / 2e-141 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124945 [exp] 414 / 2e-141 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.018G124832 [exp] 413 / 4e-141 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064700 [exp] 407 / 2e-138 AT5G20260 563 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008751 [exp] 600 / 0 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 515 / 7e-180 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 499 / 2e-174 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10013790 [exp] 496 / 4e-172 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 445 / 3e-155 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001917 [exp] 421 / 4e-143 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10005186 [exp] 406 / 6e-138 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 398 / 4e-135 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039980 [exp] 386 / 9e-129 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10002799 [exp] 338 / 8e-110 AT5G25820 627 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.014G170900.2 pacid=42763524 polypeptide=Potri.014G170900.2.p locus=Potri.014G170900 ID=Potri.014G170900.2.v4.1 annot-version=v4.1 ATGGCATACTTCTGCAGGAAACATTCAAAAGTTATTGTCATTGCCATAGCTTCCTTGGCTGTAGTTTCTGTGGCGGTTCTAACAAAGAATTCCATTAATG GATTTTCATGGTTTCATTTCTTTTCATCTCAATGGGGATGGACTAGTATTACCACTCTTGGGACGACGTCTTCTTCCTCTGTATTCATGATTGATCAAGG AAAGCGAAAGACATTGATGAATGTAGGAAAGGTTTCTAAAGAAAAATATGCTTTGATGAGAGGTGGAAATCGAAGTGATGCAAAATTAGAGAGAGTTGAA GCAGGTCTTGCCATGGCTAGAGCTTTGATAAGAGAAGCTGCAGAGGACAACAACTGCACATCAAGTCTTCATGATGATCTTGATTATATTCCTCGAGGTT ACATATATAGGAATGCTTGTGCCTTCCACAGGAGCTACCTTTTAATGGAGAAGTTGTTCAAAATCTTTGTCTACGAAGAGGGAGAGCCTCCTTTATTTCA TTATGGCACCTGCAAGGACATATACTCAATGGAAGGAGTGTTCCTCAGCTTAATGGAAACAAATACCAAGTTCCGGACCTCGAATCCTGATGAAGCTCAT GTCTATTTTCTTCCTTTTAGTGTTGTGATGATCATTGAGCACCTCTTTCATCCAATTATTCGCGATAAAGCTGTTCTGGAACGTACTGTTTCTGACTATG TCCGCATCATCTCTCATAAGTATCTGTACTGGAATCGAAGCCTTGGAGCTGATCATTTCATGCTTTCATGTCATGATTGGGGGCCTCGTGCTACTTGGTA TGTTCGTCAACTCTACTACAATTCCATCCGGGTCCTGTGCAACGCAAATACCTCAGAGTATTTTAATCCAAAGAAAGATGCATCATTTCCAGAGATCAAT CTGAAAACAGGGGAAATCACGGGCCTTACCGGTGGCTTACCCCCATCTAACCGTACAGTCCTAGCATTCTTTGCAGGTAAAATGCATGGGAAACTCAGAC CAGCACTTCTTCAGCATTGGATGGGAAAGGACAAAGACGTTCAAGTTTACGAGACACTACCACAGGGAATTTCGTATCATGAGATGATGAAGAAGAGCAA ATATTGCATTTGCCCAAGTGGGCATGAAGTTGCTAGTCCAAGAATTGCTGAGGCAATTTATGCAGAATGTGTTCCAGTCTTAATATCACAGCATTATATC TTTCCTTTCAGCGATGTTCTTAATTGGGACTCATTCACCATTCAAGTTCCAGTCACTGAAATACCAAACCTGAAGAACATTTTAGAGGGAATACCTGAAG ATCAATATTTGAGAATGCAGGAGAGAGTGAGGCAAGTGCAAAGACATTTTGTGGTGAATAATCCTCCCAGAAGATATGATGTCTTCCATATGATCATTCA TTCAATCTGGCTACGAAGGTTGAATGTGCGATTTCCTGGGTGA
AA sequence Show only first row Show all	>Potri.014G170900.2 pacid=42763524 polypeptide=Potri.014G170900.2.p locus=Potri.014G170900 ID=Potri.014G170900.2.v4.1 annot-version=v4.1 MAYFCRKHSKVIVIAIASLAVVSVAVLTKNSINGFSWFHFFSSQWGWTSITTLGTTSSSSVFMIDQGKRKTLMNVGKVSKEKYALMRGGNRSDAKLERVE AGLAMARALIREAAEDNNCTSSLHDDLDYIPRGYIYRNACAFHRSYLLMEKLFKIFVYEEGEPPLFHYGTCKDIYSMEGVFLSLMETNTKFRTSNPDEAH VYFLPFSVVMIIEHLFHPIIRDKAVLERTVSDYVRIISHKYLYWNRSLGADHFMLSCHDWGPRATWYVRQLYYNSIRVLCNANTSEYFNPKKDASFPEIN LKTGEITGLTGGLPPSNRTVLAFFAGKMHGKLRPALLQHWMGKDKDVQVYETLPQGISYHEMMKKSKYCICPSGHEVASPRIAEAIYAECVPVLISQHYI FPFSDVLNWDSFTIQVPVTEIPNLKNILEGIPEDQYLRMQERVRQVQRHFVVNNPPRRYDVFHMIIHSIWLRRLNVRFPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07620			Exostosin family protein (.1)		Potri.014G170900 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Potri.009G139700 [exp]	1.41	0.9304
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	6.70	0.9198
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	7.21	0.9240
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.008G072000 [exp]	10.00	0.9055
AT2G04100			MATE efflux family protein (.1...		Potri.004G094800 [exp]	10.09	0.9044
AT5G63660		LCR74, PDF2.5	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Potri.004G138100 [exp]	12.24	0.8941
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	13.26	0.9153
					Potri.010G135150 [exp]	14.83	0.8778
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G063750 [exp]	15.42	0.8895
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	20.00	0.8969

Compare expression of checked genes

Potri.014G170900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.