Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07600 72 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) AT5G48290 67 / 5e-15 Heavy metal transport/detoxification superfamily protein (.1.2) AT4G05030 57 / 1e-11 Copper transport protein family (.1) AT3G20180 52 / 1e-09 Copper transport protein family (.1) AT1G55790 50 / 2e-08 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171300 [exp] 195 / 6e-66 AT3G07600 75 / 5e-18 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G048400 [exp] 164 / 7e-54 AT3G07600 80 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G048300 [exp] 159 / 6e-52 AT3G07600 80 / 4e-20 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G048100 [exp] 154 / 5e-50 AT3G07600 79 / 8e-20 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G001800 [exp] 66 / 2e-15 AT4G05030 73 / 2e-18 Copper transport protein family (.1) Potri.006G001900 [exp] 63 / 3e-14 AT4G05030 88 / 3e-24 Copper transport protein family (.1) Potri.006G002000 [exp] 58 / 3e-12 AT4G05030 54 / 3e-11 Copper transport protein family (.1) Potri.001G468500 [exp] 59 / 4e-12 AT4G05030 65 / 1e-14 Copper transport protein family (.1) Potri.001G378700 [exp] 57 / 1e-11 AT3G20180 56 / 5e-11 Copper transport protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025180 [exp] 95 / 2e-26 AT5G48290 81 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016061 [exp] 93 / 2e-25 AT5G48290 82 / 1e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016062 [exp] 90 / 3e-24 AT5G48290 89 / 2e-23 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10025181 [exp] 81 / 6e-21 AT5G48290 81 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016063 [exp] 69 / 4e-16 AT3G07600 64 / 8e-14 Heavy metal transport/detoxification superfamily protein (.1) Lus10016059 [exp] 69 / 5e-16 AT4G05030 62 / 2e-13 Copper transport protein family (.1) Lus10025182 [exp] 69 / 6e-16 AT5G48290 62 / 5e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016060 [exp] 69 / 8e-16 AT3G07600 64 / 9e-14 Heavy metal transport/detoxification superfamily protein (.1) Lus10025179 [exp] 66 / 2e-14 AT4G05030 62 / 1e-13 Copper transport protein family (.1) Lus10039093 [exp] 39 / 5e-05 AT4G05030 72 / 3e-18 Copper transport protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G171500.2 pacid=42762853 polypeptide=Potri.014G171500.2.p locus=Potri.014G171500 ID=Potri.014G171500.2.v4.1 annot-version=v4.1 ATGAAGCAAAAGATAGTGATCAAGGTGACGGTGAATGGACCGAAGTCCCGCTCCAAATCCTTGCAGATTGCAGTTGGGTTTTCAGGTGTTGAATCTGCTG GTTTAGGAGGGCAAGATAAGAGCCAGATAGAGGTGGTAGGCCATGGAGTTGATGCAGTAGAACTTACAAATTGTCTGAGAAAGAAAGTAGGCTACGCAGA GATAGTAAGTGTAGCAGCTGTGGGAGAAAAGAAAGAAGAGAAGAAACCGGAGGCAGTAGTGCAGCCGGTTATTTGGTCCATGTATGGTGGAGGCGTGCCT CAGACCTATATCCATCCGATTCACACCCCCAACTATCATCAGGACCCTTCTTGCTCCATCATGTAA
AA sequence Show only first row Show all	>Potri.014G171500.2 pacid=42762853 polypeptide=Potri.014G171500.2.p locus=Potri.014G171500 ID=Potri.014G171500.2.v4.1 annot-version=v4.1 MKQKIVIKVTVNGPKSRSKSLQIAVGFSGVESAGLGGQDKSQIEVVGHGVDAVELTNCLRKKVGYAEIVSVAAVGEKKEEKKPEAVVQPVIWSMYGGGVP QTYIHPIHTPNYHQDPSCSIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171500 [exp]	0	1
AT5G10695			unknown protein		Potri.010G251000 [exp]	2.00	0.8904
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	2.44	0.8583
AT5G50460			secE/sec61-gamma protein trans...		Potri.012G098400 [exp]	4.00	0.8402	SEC61.1
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.008G159300 [exp]	4.69	0.8499	Pt-SCAM.1
AT5G65300			unknown protein		Potri.007G097000 [exp]	7.14	0.8396
AT3G03280			unknown protein		Potri.008G127200 [exp]	8.00	0.8110
AT5G39670			Calcium-binding EF-hand family...		Potri.004G122900 [exp]	9.32	0.8698
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.009G167400 [exp]	9.53	0.8568
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171300 [exp]	10.29	0.8778
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	12.80	0.8650

Compare expression of checked genes

Potri.014G171500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.