Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 408 / 1e-138 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G14400 365 / 6e-124 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT5G05690 328 / 4e-108 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G73340 300 / 2e-96 Cytochrome P450 superfamily protein (.1) AT4G36380 291 / 4e-93 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 287 / 8e-92 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G30180 266 / 7e-84 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT1G12740 263 / 1e-82 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G38970 256 / 7e-80 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT4G19230 227 / 5e-69 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341000 [exp] 502 / 5e-176 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.007G026500 [exp] 429 / 7e-147 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 424 / 4e-145 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.008G067500 [exp] 328 / 4e-108 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 328 / 1e-107 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.017G154600 [exp] 300 / 7e-97 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 298 / 9e-96 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 297 / 1e-95 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 296 / 4e-95 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016065 [exp] 702 / 0 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 419 / 2e-143 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10025183 [exp] 381 / 9e-131 AT5G14400 265 / 7e-87 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10024016 [exp] 374 / 6e-126 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 311 / 4e-101 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 311 / 4e-101 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10031295 [exp] 278 / 5e-88 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 271 / 2e-85 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10031866 [exp] 270 / 5e-85 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10024495 [exp] 268 / 1e-84 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G171700.3 pacid=42764674 polypeptide=Potri.014G171700.3.p locus=Potri.014G171700 ID=Potri.014G171700.3.v4.1 annot-version=v4.1 ATGGCTGGAGAGCTCTGGGTTGGTGTTTTGGTTGGTATAACTAGTGGTCTGTTGGGTCTAATAATGAATCATTTTCTGCCCATGTTCTTGAAGCTTGGTC ATAATGTCCCAAAGGGCTCTTTTGGGTGGCCTCTACTTGGTGAAACCCTCGGTTTCTTGAAACCTCACCCTTCTAACACCCTTGGTGCGTTTCTTCAAGA TCATTGTTCCAGGTACGGGAATGTGTTCAAGTCCCATTTATTTCTCTCTCCAACAGTGGTGTCCTGTGACCAGGAGCTGAACTATTTCATTCTTCAAAAC GAAGGCAAGTTATTCCAGTGCAGTTATCCTAAGCCTATTCACGGAATTCTTGGCAATGTCTCCATGCTGGTGGCTGTTGGTGATACTCACAAGAGACTCA GAAATGTGGCTATCTCTCTAGTTAGCATTACTAAATCAAAGCCAGAGTTCTTGAATGACATAGAAAGAACTGCCATTCAAATATTGAGCTCCTGGAAAGA TAAACAACAGGTCGTGTTCTGTGAAGAGGCTAGAAAGTTCTCATTCAATGTAATAGTAAAGCAAGTGCTTGGTTTAACATCAGAGGAGCCGGAGACTAGA GAAATTCTTGAAGATTTTCTTACTTTTATGAGAGGACTAGTATCCATCCCTCTGTATATTCCTGGTACTCCATATGCTAGAGCTGTTCAGGCTAGAAGCA GGATATCTTCTAGAGTTAAAGCAATTATAGAGGAAAGAAGATCAAGAAATAGTAGGAGTTTAAGGAATGATTTTCTTGAAATACTTCTAAGTGTTGATAC CTTATCTGAAGATGAAAAGGTGAGCTTTGTGTTGGATTCTCTTTTGGGTGGGTATGAAACTACCTCGCTCTTAATGGCCATGGTGGTGCATCTTCTAGGC CAGTCACCCACTGCATTAGAACAGTTAAAGCTAGAGCATGAGCAAATAACAAGCCTGAAGGAGAAAGATGAGTGTTTGAATTGGGAAGATTATAAGACGA TGGAATTCACTCAAAATGTCATCAGTGAAGCACTGAGATATGGAAACATTGTGAAATTTGTACACCGAAAGGCTCTCAAAGACGTAAAGTTCAGAGACTA CCTCATTCCATCTGGGTGGAAGGTCCTACCTGTTTTTACAGCTGTGCATTTAGACTCGTCTGTCCATGCAAATGCTCTCCAGTTTCATCCTTGGAGATGG GAGACTCAGGATCAGACTAGCAAGAGGTTTACCCCTTTTGGTGGAGGATCTAGATGCTGTCCCGGATCTGAACTTGCCAAGATTGAGGTTGCCTTCTTCC TTCACCACCTTGTTCAGAACTTCAGATGGACAGCCGGGGATGCTGACCAACCCATGGCATATCCATACGTTGAATTTGGAAAAGGGCTGTTGATAAATTT GGATCGTTGTTCCACCTGA
AA sequence Show only first row Show all	>Potri.014G171700.3 pacid=42764674 polypeptide=Potri.014G171700.3.p locus=Potri.014G171700 ID=Potri.014G171700.3.v4.1 annot-version=v4.1 MAGELWVGVLVGITSGLLGLIMNHFLPMFLKLGHNVPKGSFGWPLLGETLGFLKPHPSNTLGAFLQDHCSRYGNVFKSHLFLSPTVVSCDQELNYFILQN EGKLFQCSYPKPIHGILGNVSMLVAVGDTHKRLRNVAISLVSITKSKPEFLNDIERTAIQILSSWKDKQQVVFCEEARKFSFNVIVKQVLGLTSEEPETR EILEDFLTFMRGLVSIPLYIPGTPYARAVQARSRISSRVKAIIEERRSRNSRSLRNDFLEILLSVDTLSEDEKVSFVLDSLLGGYETTSLLMAMVVHLLG QSPTALEQLKLEHEQITSLKEKDECLNWEDYKTMEFTQNVISEALRYGNIVKFVHRKALKDVKFRDYLIPSGWKVLPVFTAVHLDSSVHANALQFHPWRW ETQDQTSKRFTPFGGGSRCCPGSELAKIEVAFFLHHLVQNFRWTAGDADQPMAYPYVEFGKGLLINLDRCST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.014G171700 [exp]	0	1
AT5G22580			Stress responsive A/B Barrel D...		Potri.009G148100 [exp]	2.00	0.9240
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	4.24	0.8909
					Potri.010G076425 [exp]	5.91	0.8888
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	9.48	0.8697
AT5G22580			Stress responsive A/B Barrel D...		Potri.004G187500 [exp]	11.48	0.8894
AT5G35735			Auxin-responsive family protei...		Potri.004G006700 [exp]	16.52	0.8647
					Potri.018G101800 [exp]	17.20	0.8249
AT4G37445			unknown protein		Potri.007G051200 [exp]	22.58	0.8839
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	22.91	0.8811
AT4G24630			DHHC-type zinc finger family p...		Potri.007G077000 [exp]	23.23	0.8313

Compare expression of checked genes

Potri.014G171700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.