Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48300 885 / 0 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT5G19220 536 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 529 / 0 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 483 / 5e-167 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 479 / 2e-165 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT1G05610 419 / 1e-142 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT2G04650 45 / 9e-05 ADP-glucose pyrophosphorylase family protein (.1) AT2G39770 45 / 0.0001 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195100 [exp] 538 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.005G229700 [exp] 532 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 528 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 524 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 492 / 2e-170 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 492 / 2e-170 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.007G146100 [exp] 476 / 7e-165 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 468 / 7e-161 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.006G090300 [exp] 48 / 9e-06 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016069 [exp] 916 / 0 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10025187 [exp] 913 / 0 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10034053 [exp] 537 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 520 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 511 / 5e-178 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10023553 [exp] 498 / 5e-173 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10010088 [exp] 495 / 9e-172 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10040437 [exp] 467 / 4e-161 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10042456 [exp] 391 / 3e-131 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 348 / 7e-115 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.014G171800.1 pacid=42764472 polypeptide=Potri.014G171800.1.p locus=Potri.014G171800 ID=Potri.014G171800.1.v4.1 annot-version=v4.1 ATGGCGAGTATGGCGGCGATCGGAGTTATGAGGCCGCCGTCTTCATCCTCGTTGTCTTCTTCTTCTTCGTCGAATTTGAGCCGGAGAACTGCATTTAGGA GCCTGTCGTTCAGCTCGTCCTCCAACCTCTCCGGTGGGAAGGTTTGCTCCACGGCGTTTTCCGTTCGCCGGGATACAGGTCGTAATGAGAGGACTCCGAT GATCGTTTCTCCTAAAGCGGTTTCGGATTCAAGGAACTCTCAAACTTGTCTTGACCCTGACGCCAGCAGAAGTGTTCTTGGAATTATTCTTGGAGGAGGA GCTGGGACTCGGCTTTACCCGCTTACTAAGAAAAGGGCAAAGCCTGCTGTTCCTTTAGGAGCTAACTACAGGCTGATTGATATTCCTGTGAGCAATTGTT TGAATAGTAATATATCAAAGATATATGTTCTCACACAATTCAACTCTGCCTCTCTCAACCGCCACCTTTCACGGGCTTATGCGAGCAACATGGGTGGCTA CAAGAATGAGGGTTTTGTTGAAGTTCTTGCAGCTCAGCAGAGTCCTGAGAACCCCAATTGGTTCCAGGGCACAGCAGATGCTGTCAGACAGTATTTGTGG TTGTTTGAGGAGCACAATGTTTTGGAATTCCTAGTTCTTGCTGGCGACCATTTGTACCGAATGGATTATGAGAGATTTATCCAAGCTCACAGGGAAACTG ATGCAGATATCACTGTAGCTGCACTGCCAATGGACGAAAAACGTGCAACTGCATTTGGTTTGATGAAAATTGATGAAGAAGGGCGCATAATTGAATTTGC TGAGAAACCCAAAGGAGAACAATTGAAAGCTATGAAGGTTGACACTACTATTTTAGGTCTTGATGATGAGAGAGCAAAAGAGATGCCTTACATTGCTAGC ATGGGAATATATGTTGTCAGCAAGAATGTGATGCTGGATCTGCTGAGAGAAAAGTTTCCTGGAGCCAATGATTTTGGAAGTGAAGTTATTCCTGGTGCTA CTTCTATTGGGATGAGAGTACAAGCTTATTTATATGATGGCTACTGGGAAGATATTGGTACAATTGAGGCATTTTATAATGCAAATCTTGGGATAACTAA AAAGCCAGTGCCAGATTTCAGCTTCTATGACCGTTCATCTCCAATCTACACTCAACCTCGCTATTTGCCTCCATCCAAGATGCTTGATGCTGATGTCACG GATAGTGTTATTGGTGAGGGTTGTGTTATAAAGAACTGTAAAATTCACCACTCTGTGATTGGTCTTCGGTCTTGCATATCAGAAGGTGCGATCATAGAAG ACACATTATTAATGGGAGCAGATTATTATGAGACTGATGCTGACAGGAGATATTTGGCTGCTAAGGGAAGCGTTCCAATTGGTATTGGCAAGAATTCTCA TATCAAGAGAGCAATTATTGACAAGAATGCTCGAATTGGGGACAATGTGAAGATCATTAATGGTGACAATGTGCAAGAAGCAGCCAGGGAAACTGATGGA TACTTCATAAAGAGTGGGATTGTCACAGTAATCAAGGACGCGTTGATTCCCAGCGGAACTGTGATCTAG
AA sequence Show only first row Show all	>Potri.014G171800.1 pacid=42764472 polypeptide=Potri.014G171800.1.p locus=Potri.014G171800 ID=Potri.014G171800.1.v4.1 annot-version=v4.1 MASMAAIGVMRPPSSSSLSSSSSSNLSRRTAFRSLSFSSSSNLSGGKVCSTAFSVRRDTGRNERTPMIVSPKAVSDSRNSQTCLDPDASRSVLGIILGGG AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW LFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS MGIYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVT DSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRRYLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINGDNVQEAARETDG YFIKSGIVTVIKDALIPSGTVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.014G171800 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.017G093200 [exp]	1.00	0.9135
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	6.00	0.8907
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	15.39	0.9110
AT2G46915			Protein of unknown function (D...		Potri.002G183900 [exp]	22.04	0.9125
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.011G055600 [exp]	23.36	0.8792
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	34.23	0.9038	Pt-MST2.1
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	34.58	0.8742
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	40.03	0.8492
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.005G150400 [exp]	48.53	0.8705
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	53.61	0.8619

Compare expression of checked genes

Potri.014G171800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.