Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12640 698 / 0 RNA recognition motif (RRM)-containing protein (.1) AT2G43410 152 / 1e-37 FPA RNA binding (.1.2.3.4) AT3G08000 56 / 8e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G36660 58 / 2e-08 PAB7 poly(A) binding protein 7 (.1) AT4G34110 58 / 2e-08 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G46610 55 / 5e-08 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G49430 54 / 2e-07 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT5G54900 54 / 3e-07 ATRBP45A RNA-binding protein 45A (.1) AT2G30260 53 / 3e-07 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G09140 52 / 5e-07 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131100 [exp] 157 / 4e-39 AT2G43410 633 / 0.0 RNA binding (.1.2.3.4) Potri.017G026600 [exp] 157 / 4e-39 AT2G43410 659 / 0.0 RNA binding (.1.2.3.4) Potri.009G105300 [exp] 61 / 2e-09 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G157300 [exp] 57 / 2e-09 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G143400 [exp] 58 / 2e-08 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.019G121400 [exp] 54 / 1e-07 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.009G054400 [exp] 55 / 2e-07 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G153700 [exp] 53 / 2e-07 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.002G062700 [exp] 54 / 4e-07 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016070 [exp] 795 / 0 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10025188 [exp] 793 / 0 AT4G12640 567 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10019359 [exp] 262 / 7e-74 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10007419 [exp] 256 / 4e-72 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4) Lus10031277 [exp] 57 / 5e-08 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 56 / 1e-07 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10007869 [exp] 53 / 5e-07 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 52 / 1e-06 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 52 / 1e-06 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10027886 [exp] 51 / 4e-06 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0616 [poplar] [flax] SPOC PF07744 [poplar] [flax] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Potri.014G171900.1 pacid=42763270 polypeptide=Potri.014G171900.1.p locus=Potri.014G171900 ID=Potri.014G171900.1.v4.1 annot-version=v4.1 ATGACTAGTAGAGGAGGAGGAGTTCCCGGAGGAGTAGGCAGAGACCGATTTCGAAGAGAATTTACCTCTTCTCGATTCGAATCGAGTAATAGTAACGGTA AGAGAGGGAATAACCCGCCGTCGAGGCATCTATGGGTGGGGAATTTATCTCACAGTATAGAAGAGACCGATTTGACAGATGAATTCCTGCAATTCGGAGA CCTGGATAGCGTTGCATTTCAGCCGGGACGCAGCTATGCTTTTGTTAATTTTAACAAGGAAGAAGATGCGATTGCGGCCATCAAGTCTCTCCAGGGTTAT CCTCTCGCCGGCAACCCTCTTAGGATTGAGTTTGCTAAGGCGGACAAGTCATCAACACCATCACATGATGAAGATTACTTGCAACGGCGAGATGAACAAC GCCTTACATTAAGGGGATCCCCTTTCTTGCAGAGGGACTCTAGAGTGCGTAATGCTAGCCCCGAAACTTTTTACCCTGATAAATCCAAGATGAGCGATAA TAGTGCAGAACCTAGTGAGGTATTATGGATAGGTTTTCCAGCTTTACTAAAGGTGGATGAAATGATCTTACGGAAGGCTTTTTCACCATTTGGTGAGATT GAAAAGATCACTGTATTTCCAGGTCGTAGTTATGCTTTTGTGAGGTTCACAAATCTAACATCAGCTTGCAGGGCAAAAGAAACTCTTCAGGGGAAATTAT TTGGCAACCCTCGTGTGCATATTTGTTTTGCCAAGAATGAAGCTGGGTCTTCAAATAGTGGAAGGACCCCGCTTTCTCCGCATTACAAGCCAAACAGTCG CCAAGGAGGCCCTGAGAACTTCTGGCAGGATAGGAATTTTGGGAGCACAGCTACAGATCCCAGTATTAGATCTCCTCGTTTCAACTCAGATTTGGATCCT GCGGATTCTGATGTCTATGGCCTTAACAGGAAGGGAACCTTGCACCAGGTTGGAAACGGTGCATTTGATAACTGGAGGTTTGGAGAAGAACTAGGACCAC CACCAGATGTGTATGAACGACATGGTAGTCCTACAAGAGGGAGGGATGCCCACTTCCATGAATTTGCTAAAAAAAATCCTCAGAAAGGTCCCTTTTATGA AGAACCATGGGATTTACCAGAAGATTCCTATCTGTATCATGAAGCCAAGAAGTTGAAGACAGGCTCCTTTCCTCCTGACAAGGAACTTCCAGAGTATCCT TACTCTGATTTAGAACAGGAAAGAAGGGCTTTCCCTAGGGCATTTTCTGATTTTCCCCAACCAGAGGCATTTGATAAGAACCTGGAAGCTGGACCTTTTG GATACACACCAATCCAAGACCGGCCAATCAATTTATCACTTCCTCATGGAGAAAGGAGTGACCCCTGGAAGGTATCTTATGACAATTTCCAGGCTGGCTC TGGTTCTCTGCCCACAAATCGCACTGAGAGGAAAAGATTCACCCCTGAACCAGAACCATCCTCTTTGAAGTTATGGAAATGGGAAGGGACTATAGCAAAG GGAGGGACTCCTGTCTGTCATGCTCGCTGCTTTCCCGTGGGAAAAGCGCTAGACTTTATGTTGCCTGATTTCCTGGATTGCACTGCAAGAACTGGTCTAG ACATGCTTGCAAAACACTACTATCAAGCAGCTTCTGCTTGGGTTGTATTCTTTGTCCCTGCTAGTGATGCAGATATGGGATACTACAATGAACTCATGCA CTATCTGGAGGAGAAGCAGCGTGCAGCAGTTGCTAAATTGGATGATAAGACCACCTTGTTTCTTGTACCTCCATCTGATTTCTCAGAGAAAGTACTGAGA GTACCTGGCAAATTGAGCATATCTGGTGTTATTTTGAGGTTAGAGAATTCTGGTTCAAATCTTGGGCCTGTTCACCATCCAAATGAAAAAAGGGATATGA ATATACTGCCATTTCACAGGGATCCATCGTATCCAAAGCCACCAACACATTCAGGTCAGTTTCCTGCAATGGTGTCTTTTTCAGATTTGAGTAGATCAGG AGGTGATCCAGCTTTCCTAGGGAATGTGGCTTCAACAGCTCCACCTGTGGCATTTTCGGGTCCGGCCCATCCTGCTGGAAGTATATCTGATTCCTACAAT GAGAGTAGGCATCATTATCCTCTCCAACAGCAGAACTCCACATTGAGGCCCAACTGGTCTCCTCACCATTCCCAGAGCATTGTTTCTGGTAATAGAAATG TACCATCACAAGCATCCAATACTGCTGTTGATCCTGTTATTCCAGAGCATCACTCAGTCCTGCCAAGGACAGTGCAAGAAAATGGCCCTGCACATTTTGC AAGTGGAATGTCAACCAATCCAGTGTCTGGAAACAGCAAGTCGACCTTTCAGGAAACCAAGCCTTCTGTTCCAGTGTCTTTGCCTATTGCAGGTTTGCAA CCACAACAACTTGCACAATTAGCATCATCGCTTCTAGGGCAGCAGAGGCTATTGGGTAATAATTCAAATGGATCTGCTAGTGAGGATTTTAAGCGGACAG TGAATCAGTCTGGCAACCAAGTTGGAATAGCACAGGCACTTGGTTTGCACAAAAATCAAGTGGGCTCTGAGATGCTGACATCTCAGTTTAGTCAATTACA ACAGATGCAACAGCAGCAGGTATCAAATGTGCCTACTTCAGTGCCACCCCCAGTTAGAAAAGAGCTTCAGCCAGGGGCTCAGGGTAATCCACGGATGGAA AGTGCTGGCACACAAGAGGAAGCAGATGGAGATCCTCAAAAGCGTCTGCAAGCAACATTACAGCTCGCAGCAGCTCTTCTTCAGCAAATACAACAAGGGA AAGGAACTTGA
AA sequence Show only first row Show all	>Potri.014G171900.1 pacid=42763270 polypeptide=Potri.014G171900.1.p locus=Potri.014G171900 ID=Potri.014G171900.1.v4.1 annot-version=v4.1 MTSRGGGVPGGVGRDRFRREFTSSRFESSNSNGKRGNNPPSRHLWVGNLSHSIEETDLTDEFLQFGDLDSVAFQPGRSYAFVNFNKEEDAIAAIKSLQGY PLAGNPLRIEFAKADKSSTPSHDEDYLQRRDEQRLTLRGSPFLQRDSRVRNASPETFYPDKSKMSDNSAEPSEVLWIGFPALLKVDEMILRKAFSPFGEI EKITVFPGRSYAFVRFTNLTSACRAKETLQGKLFGNPRVHICFAKNEAGSSNSGRTPLSPHYKPNSRQGGPENFWQDRNFGSTATDPSIRSPRFNSDLDP ADSDVYGLNRKGTLHQVGNGAFDNWRFGEELGPPPDVYERHGSPTRGRDAHFHEFAKKNPQKGPFYEEPWDLPEDSYLYHEAKKLKTGSFPPDKELPEYP YSDLEQERRAFPRAFSDFPQPEAFDKNLEAGPFGYTPIQDRPINLSLPHGERSDPWKVSYDNFQAGSGSLPTNRTERKRFTPEPEPSSLKLWKWEGTIAK GGTPVCHARCFPVGKALDFMLPDFLDCTARTGLDMLAKHYYQAASAWVVFFVPASDADMGYYNELMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLR VPGKLSISGVILRLENSGSNLGPVHHPNEKRDMNILPFHRDPSYPKPPTHSGQFPAMVSFSDLSRSGGDPAFLGNVASTAPPVAFSGPAHPAGSISDSYN ESRHHYPLQQQNSTLRPNWSPHHSQSIVSGNRNVPSQASNTAVDPVIPEHHSVLPRTVQENGPAHFASGMSTNPVSGNSKSTFQETKPSVPVSLPIAGLQ PQQLAQLASSLLGQQRLLGNNSNGSASEDFKRTVNQSGNQVGIAQALGLHKNQVGSEMLTSQFSQLQQMQQQQVSNVPTSVPPPVRKELQPGAQGNPRME SAGTQEEADGDPQKRLQATLQLAAALLQQIQQGKGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	0	1
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	1.73	0.8942
AT1G32260			unknown protein		Potri.003G095600 [exp]	2.00	0.9024
AT1G15060			Uncharacterised conserved prot...		Potri.008G124400 [exp]	2.64	0.8785
					Potri.011G062950 [exp]	2.82	0.9048
					Potri.001G371500 [exp]	3.46	0.8925
AT2G19540			Transducin family protein / WD...		Potri.005G074400 [exp]	4.12	0.8555
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	4.69	0.8631	Pt-FTSH4.1
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	5.00	0.8832
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.010G237100 [exp]	6.16	0.8497
AT1G77290			Glutathione S-transferase fami...		Potri.005G182000 [exp]	6.92	0.8760

Compare expression of checked genes

Potri.014G171900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.