Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48310 1350 / 0 unknown protein AT4G24610 873 / 0 unknown protein AT5G65440 749 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104100 [exp] 944 / 0 AT4G24610 1508 / 0.0 unknown protein Potri.004G118950 [exp] 105 / 2e-26 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016071 [exp] 1625 / 0 AT5G48310 1328 / 0.0 unknown protein Lus10025189 [exp] 1508 / 0 AT5G48310 1258 / 0.0 unknown protein Lus10000766 [exp] 919 / 0 AT4G24610 1499 / 0.0 unknown protein Lus10015962 [exp] 906 / 0 AT4G24610 1476 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G172000.4 pacid=42762758 polypeptide=Potri.014G172000.4.p locus=Potri.014G172000 ID=Potri.014G172000.4.v4.1 annot-version=v4.1 ATGTTCACTGAAGGTCTGGATGAATCCGCCATTAACTGGATCAAGCGGGGATCAGATGCAGAAGAATCTCAACCTAAAGTTCGATCTCCGCTATCTCCGT TATCAGCAGAGAAGCTATCACCACCAGCAGCAGCAGAAAACCCATTTCCGAAATCTCCATTTTTCTACAATAGCTCTTCCCATTTATTGCCTCCGCTTAA ATTCCATTCTGGGTTACTGACCCCTCACAGTATAGTCTCTCCGTGCCTTCAGAACAAAGAAGAAGACGACGATAATGTGAGCGTGGCTTCAGTTTCTGAT TACGAGATTGGTCGTAGAAACTACACTGAAGAGGATGGTTTTGAGGATATAGGTCCTTCCGATTTTGATTACTTGGAGAAGCCTGTGATGCAAAGTTATC AGGATGAAGATGAGGAGGAGATTTTTGGGGTTACTAGAAATAGGCCTACTGCTAAAACCAAGTTGAATAGAGGGGTTTTGAAGGAGGATTTGAAGATTGA ATTGCCTGGTCACTTTAGAAGGCTTAAGAGTGCCACTCAAGTTGATGGTGATCTAGGGTTTAGAAAATCTGGAACACCCAAGAAGAATTCGGTGGGCCCG GGTGGTAGTTTTTCGCTTCGAGAGAGAGTTCAGCTACGCAATGCACAATTGGATAATTTCAGCAATGAAGCAAATGTATTTAGACCGGTGGAGGAGATGG GGACTCCAAGTGCTCCTCCAATAATTGAAATTGGAGGAGAAGAAGGGAATGTTACGTTTGACACAGAAACTGAGCAAATTGCGTATGGAGTTGGCAAGCC AAGAGAATCAGCGGAAGGTTTATTTGATCAAACATCACAATCTATGCAAAGTACCGAATGTGATGAAAGAATAAATAGCTTTATGACAGGAGAAATGGAA GGAAAGATGCCTTATTGGCAGACTAGTTCATCAGACCGTTCACCTTGTTATAACACGGGCGGTCAATATGCGTGGCAAACTATGATTGCTTACGATGCAT GTATCCGCTTATGTCTATATGCCTGGGCTAGAGGTCGCACTGAGGCTCCTGAGTTTCTGCGTGATGAGTGTCTGATTCTTAGAAGTGCTTTTGGACTACA CAAATTTTTGTTGCAACCACGCCGTATACAACCTGTAGCAGTCAACTCAACTAAAATTGCAGAACAAACATGCCCTTTGAAGGCAAAAAAGGTTGTTGGG AAGATAAGAGTTGAAGTAAAGAAACTCCGGATAATACCAAGGCGGAAACTTATGAGCACTTACTCCCAGCGTAGTGCAATCTACATGCAAATGGGGAAAG AGTATGTCCAGCATGTTTCATCGCTAGTGAAAACTGGCATGAATTCGCTTAAAATAGCTTCGTTTCCAGTGCCAACAGAAGAGAAACTGACATGCTTATT CCAACTGAAGAGTACTACTGAAAATTCTCAAGTTGAACCAGGTTCTGCTATTTGTTTACACCCAGGAAGTGGGGATTACCACATCTTTTTTCCAGAAAGT GAAGGGGAAGCACTTTTGGTAGAGGTACAAGATACAAAAAAGTCACTCCAAGGCCGAGCTACAATTGCTATTTCATCTTTCAATGATAATCCTAGTGATA GAATTCGATGGTGGCCCTTATACCATGAAGATCAAGAATGTGTTGGGAAGATACAACTCTTCATTGGCAGTACTATTACACAGGATGAGACTAATAATAT TAAGAGTGGTCCTGTTGTGGAAACAATAGCTTATGATCTACTACTGGAGGCTGCTATGCACGCACAGCTTTTTCATTCTCGAAATTTGAGATTACATGGA TCTTGGAAGTGGCTGTTGATTGAATTTGCAGATTATTATGGAGTTTCTGATTCATATACAAAATTGAGATATCTTTCACGGGTCATGGATGTGGCCCTTC CAAAGAAAGACTGCTTGGAGCTTGTCAATGAGTTACTTGTACCCATTATGAAGGCTAGGAGTGAGAAGAGTTTAACCGTGCAAGAGAAAAGTATATTTTT AGATTGCGAAACACGAATTGAGAGTCTCTTGGCACAAGTTTTTGAGAACTACAAATCACTGGATGAAAACTCACCCACAGGGTTGGCAGACCTGTTCAAC CCGATGCAAGAGTCTGCAGCACCAGCTCTAGGTGAAGCTGTTAAAGTCTACACCCTACTCCATGACATACTATCTCAAGATGCGCAGACTATGCTGAGGA ACTATTTGCAGACAGCAGCGAAGAAGAGATGTCGAAAACACATGGTAGAGACTGATGAGTTTGTTTCTGGCAACTCTGAAGGCTTCCTCTTAGACTCTAT AACTATCTCCACAGCCTATTTAAAAATGAAAAATTTGTGTCTGAATATTGGGAAGGAAATTCAGGCAGACATCAGGATCCACAACCAGCATCTACTCCCA AGTTCAATCGACTTGTCAAACATCGCTGCTGCAGTTTATAGCACTGAGTTGTGTAACAGGCTTAGAATTTTTCTCTCTGCATGTCCTCCATCTAGCCCGC AACCACATGTAAATGAACTACTGATAGCAATTGCTGATTTTGAACGGGATCTTGAGTTATGGAATATCAGTCCAGTGCAAGGTGGCGTAGATTCGAGGGG ATTGTTTCATAGTTACATAATGGTCTGGGTGCAGGATATGCAAATTAACTTGCTTGAACTTTGCAAAGCAGAAAAGGTGCCATGGGCTGGAGTAATGACG AATCATTCCACTTCTCCATTCGCTGAAGAAATGTATGAGAGAATCAAAGATGCACTTATTGAGTACGAAGTGGTGATCAACCGATGGCCTCGGTACTCCT TGATTTTGGAAAATGCTGTTGCTGATGTGGAAAGAGCAATAGTTAAAGCTTTGGAGAAGCAATACAATGACATCTTGACTCCTTTGAAAGATAGCATTCC AAAGAGGCTTAATATGCATGTCCAAAAGCTGACAAGAAGACAATCAACAACACTTTATTCTGTACCTAATCAATTGGGAATTTTTCTGAATACAATCAAG AGAATCCTTGATGTCTTACATTGTAGAGTGGAGGACATTTTTAAGTCCTGGGCTTCCTATCTACCTCTCGTGGGAGATAAAAAGTCAATTTGCGGGGAGC AGATGAATGGAATTACTGTTCTGTTGAGAACAAAACACAAAAATTACTTGCAGGCAACAGTGGAGAAGCTCGTTAACAATGTGCAAGCTAGTCGAAGCAC ACGACTAAAAAGAATTTTGGAGGACATAAGGGAAGAAGATGGAGAGGCTGAGGTCCGTGAAAGAATGCAGATTCTAAGTTCACAGCTCATTGATTGTATA TCCAATTTGCATGATGTTTTTGCTAGCCGGATATTTGTCGCAACATGTCGTGGATTCTGGGATAGGATGGGAGAGATCGTTTTGAAGTTTCTTGAGAGCA GGAAGGAGAACAAAGTGTGGTATAATGGTTCCTGCTATGCACTTGGGATACTGGATGACACATTTGCTTCGCAAATGCAGAGACTGCTAGGAAACTCACT TCAAGAGAAGGATCTAGAGCCCCCTCGCTCTGTAATTGAAGCTCGATCTATTCTTTGCAACACGGCGAACGCAACAGAGACATCTACCTACTTCTATGTT TAG
AA sequence Show only first row Show all	>Potri.014G172000.4 pacid=42762758 polypeptide=Potri.014G172000.4.p locus=Potri.014G172000 ID=Potri.014G172000.4.v4.1 annot-version=v4.1 MFTEGLDESAINWIKRGSDAEESQPKVRSPLSPLSAEKLSPPAAAENPFPKSPFFYNSSSHLLPPLKFHSGLLTPHSIVSPCLQNKEEDDDNVSVASVSD YEIGRRNYTEEDGFEDIGPSDFDYLEKPVMQSYQDEDEEEIFGVTRNRPTAKTKLNRGVLKEDLKIELPGHFRRLKSATQVDGDLGFRKSGTPKKNSVGP GGSFSLRERVQLRNAQLDNFSNEANVFRPVEEMGTPSAPPIIEIGGEEGNVTFDTETEQIAYGVGKPRESAEGLFDQTSQSMQSTECDERINSFMTGEME GKMPYWQTSSSDRSPCYNTGGQYAWQTMIAYDACIRLCLYAWARGRTEAPEFLRDECLILRSAFGLHKFLLQPRRIQPVAVNSTKIAEQTCPLKAKKVVG KIRVEVKKLRIIPRRKLMSTYSQRSAIYMQMGKEYVQHVSSLVKTGMNSLKIASFPVPTEEKLTCLFQLKSTTENSQVEPGSAICLHPGSGDYHIFFPES EGEALLVEVQDTKKSLQGRATIAISSFNDNPSDRIRWWPLYHEDQECVGKIQLFIGSTITQDETNNIKSGPVVETIAYDLLLEAAMHAQLFHSRNLRLHG SWKWLLIEFADYYGVSDSYTKLRYLSRVMDVALPKKDCLELVNELLVPIMKARSEKSLTVQEKSIFLDCETRIESLLAQVFENYKSLDENSPTGLADLFN PMQESAAPALGEAVKVYTLLHDILSQDAQTMLRNYLQTAAKKRCRKHMVETDEFVSGNSEGFLLDSITISTAYLKMKNLCLNIGKEIQADIRIHNQHLLP SSIDLSNIAAAVYSTELCNRLRIFLSACPPSSPQPHVNELLIAIADFERDLELWNISPVQGGVDSRGLFHSYIMVWVQDMQINLLELCKAEKVPWAGVMT NHSTSPFAEEMYERIKDALIEYEVVINRWPRYSLILENAVADVERAIVKALEKQYNDILTPLKDSIPKRLNMHVQKLTRRQSTTLYSVPNQLGIFLNTIK RILDVLHCRVEDIFKSWASYLPLVGDKKSICGEQMNGITVLLRTKHKNYLQATVEKLVNNVQASRSTRLKRILEDIREEDGEAEVRERMQILSSQLIDCI SNLHDVFASRIFVATCRGFWDRMGEIVLKFLESRKENKVWYNGSCYALGILDDTFASQMQRLLGNSLQEKDLEPPRSVIEARSILCNTANATETSTYFYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48310			unknown protein		Potri.014G172000 [exp]	0	1
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	1.00	0.9848	HIK.3
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	2.00	0.9812
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Potri.008G149500 [exp]	2.00	0.9757
					Potri.001G407200 [exp]	2.23	0.9725
AT5G27550			P-loop containing nucleoside t...		Potri.013G020700 [exp]	3.00	0.9790
AT4G17000			unknown protein		Potri.001G287800 [exp]	6.48	0.9499
AT5G11510	MYB	ATMYB3R-4, AtMY...	myb domain protein 3R4, myb do...		Potri.006G241700 [exp]	8.12	0.9587	Pt-MYB3.2,MYB160
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.002G200300 [exp]	8.83	0.9713	ATCSLD5.2
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	9.79	0.9660
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	10.58	0.9704

Compare expression of checked genes

Potri.014G172000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.