Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12650 1115 / 0 Endomembrane protein 70 protein family (.1) AT5G35160 866 / 0 Endomembrane protein 70 protein family (.1.2) AT2G24170 516 / 1e-176 Endomembrane protein 70 protein family (.1) AT5G10840 503 / 6e-171 Endomembrane protein 70 protein family (.1) AT3G13772 500 / 3e-170 AtTMN7 transmembrane nine 7 (.1) AT5G25100 495 / 4e-168 Endomembrane protein 70 protein family (.1.2) AT1G55130 492 / 5e-167 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT1G14670 249 / 6e-74 Endomembrane protein 70 protein family (.1) AT5G37310 247 / 3e-73 Endomembrane protein 70 protein family (.1) AT2G01970 245 / 2e-72 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G217300 [exp] 1237 / 0 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G113500 [exp] 866 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G189300 [exp] 862 / 0 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G184200 [exp] 519 / 2e-177 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 516 / 3e-176 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 511 / 2e-174 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 503 / 2e-171 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G264500 [exp] 495 / 1e-167 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 249 / 6e-74 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016072 [exp] 1176 / 0 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10027831 [exp] 858 / 0 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 851 / 0 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10019073 [exp] 643 / 0 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000222 [exp] 524 / 2e-179 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 514 / 9e-176 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 509 / 1e-173 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10042415 [exp] 506 / 3e-172 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026254 [exp] 506 / 6e-172 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 239 / 3e-70 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.014G172200.1 pacid=42762526 polypeptide=Potri.014G172200.1.p locus=Potri.014G172200 ID=Potri.014G172200.1.v4.1 annot-version=v4.1 ATGAGGACGCCCATGATCTGTTGGGCTTTCCTTCTTCTGGTTTTGTTTGGCAAAGCATGCAATGGGTTTTATTTGCCTGGTAGCTATATGCACACGTATT CAACCGGGGATGAAATCGTTGCCAAAGTTAACTCCTTAACTTCTATTGAAACCGAGCTTCCTTTTAGCTACTACAGTCTCCCTTATTGCCAACCCCATGG TGGAATAAAAAAAAGTGCTGAGAATCTTGGGGAGCTTCTTATGGGAGATCAGATCGATAACTCTCCTTACAGGTTTAGAATGAATGTGAATGAGTCTGTT TACCTTTGCACTACCAAGCCTTTGAGTGAGCATGAGGTTAAGCTTCTGAAGCAGAGAACACGTGATCTATATCAAGTGAACATGATTTTGGATAATTTGC CTGTGATGAGGTATGCCAAGCAAAATGGAATTGACATTCAGTGGACCGGTTTCCCTGTTGGGTATACACCACAAAATAGTAATGATGATTATATAATCAA TCACCTCAAGTTCACTGTGTTGGTTCATGAGTATGAAGGGAGTGGTGTTGAGGTTATTGGTACTGGGGAAGAAGGCATGGGTATGATTTCTGAATCTGAT AAGAAGAAGGCATCTGGTTTCGAGATTGTTGGTTTTGTGGTTGTGCCTTGCAGTGTTAAGTATGATCCTGAAGTGATGACAAAGCACCATATCTATGACA ACATCTCACTTGTGGACTGCCCCTCGGATCTCGACAAGTCTCAGATCATAAGGGAGCAAGAGAGGATATCCTTCACCTACGTGGTTGAATTTGTGAAAAG TGACATTAGATGGCCATCTCGTTGGGATGCGTACTTGAAGATGGAAGGTGCTCGCGTTCACTGGTTCTCAATCCTGAACTCACTCATGGTGATCTTTTTC CTGGCTGGTATTGTTTTCGTCATCTTCTTAAGGACTGTGAGAAGGGATTTGACTAGGTACGAGGAACTAGACAAAGAAGCTCAAGCACAGATGAATGAGG AGCTTTCTGGATGGAAGCTTGTTGTCGGTGATGTGTTCAGAGAACCAGATTGCCCAAAGCTTCTCTGTGTGATGGTTGGAGATGGTGTTCAAATTACAGG GATGGCAGTAGTTACTATTGTTTTTGCAGCCTTTGGTTTCATGTCGCCAGCTTCACGAGGAATGCTGCTGACAGGGATGATTCTTCTGTATCTTTTCCTA GGTACTGCTGCAGGCTATGCTGCAGTACGCATGTGGAGAACCATCAAAGGAACTTCAGAAGGATGGAGGTCCATCTCTTGGTCAGTTGCGTCCTTCTTCC CTGGGATTGTCTTTGTTATCCTAACAATTTTGAATTTCATTCTCTGGGGAAGCCATAGTACTGGTGCTATTCCTATTTCCTTGTATTTTGTCCTTTTGTC CCTCTGGTTCTGCATTTCAGTGCCACTCACTCTCTTGGGAGGATTCATGGGGACACGAGCTGAGGCAATTCAATACCCAGTGAGAACAAACCAGATACCA AGAGAAATTCCTGCACGTAAATTGCCATCATGGGTGCTTGTCCTGGGTGCCGGAACCCTTCCCTTTGGGACCCTTTTCATTGAACTGTTTTTTATTCTCT CAAGCATCTGGCTTGGACGGTTTTATTATGTATTCGGTTTCTTGCTGATAGTTCTGCTGCTCCTGGTTATTGTCTGTGCTGAAGTGTCTGTGGTTCTTAC CTACATGCATCTTTGTGTGGAGGATTGGCGGTGGTGGTGGAAGGCTTTCTTTGCTTCTGGTTCAGTTTCAATCTTTGTCTTTCTGTACTCCATCAATTAC CTGGTCTTTGACCTACAGAGTTTGAGTGGACCCGTGTCAGCCATACTCTATCTGGGCTATTCACTGATCATGGCAATTGCAATCATGTTGTCTACTGGCA CCATTGGTCTCCTTACATCGTTCTACTTTGTGCATTACCTTTTCTCATCTGTAAAGATAGACTAA
AA sequence Show only first row Show all	>Potri.014G172200.1 pacid=42762526 polypeptide=Potri.014G172200.1.p locus=Potri.014G172200 ID=Potri.014G172200.1.v4.1 annot-version=v4.1 MRTPMICWAFLLLVLFGKACNGFYLPGSYMHTYSTGDEIVAKVNSLTSIETELPFSYYSLPYCQPHGGIKKSAENLGELLMGDQIDNSPYRFRMNVNESV YLCTTKPLSEHEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGIDIQWTGFPVGYTPQNSNDDYIINHLKFTVLVHEYEGSGVEVIGTGEEGMGMISESD KKKASGFEIVGFVVVPCSVKYDPEVMTKHHIYDNISLVDCPSDLDKSQIIREQERISFTYVVEFVKSDIRWPSRWDAYLKMEGARVHWFSILNSLMVIFF LAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDCPKLLCVMVGDGVQITGMAVVTIVFAAFGFMSPASRGMLLTGMILLYLFL GTAAGYAAVRMWRTIKGTSEGWRSISWSVASFFPGIVFVILTILNFILWGSHSTGAIPISLYFVLLSLWFCISVPLTLLGGFMGTRAEAIQYPVRTNQIP REIPARKLPSWVLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVIVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVSIFVFLYSINY LVFDLQSLSGPVSAILYLGYSLIMAIAIMLSTGTIGLLTSFYFVHYLFSSVKID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12650			Endomembrane protein 70 protei...		Potri.014G172200 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Potri.006G189300 [exp]	2.00	0.9518
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075525 [exp]	3.00	0.9519
AT5G25510			Protein phosphatase 2A regulat...		Potri.006G247100 [exp]	3.74	0.9340
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	5.47	0.9494
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	5.47	0.9369
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	5.91	0.9478
AT2G15860			unknown protein		Potri.009G107800 [exp]	8.48	0.9067
AT5G27490			Integral membrane Yip1 family ...		Potri.013G023400 [exp]	9.89	0.9405
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Potri.003G038700 [exp]	11.48	0.9078
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.012G057300 [exp]	12.32	0.9048

Compare expression of checked genes

Potri.014G172200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.