Plant FIBer expression Database

Potri.014G172300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11120 514 / 0 translation elongation factor Ts (EF-Ts), putative (.1)
AT4G29060 83 / 6e-17 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G083900
[exp]
85 / 1e-17 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016073
[exp]
552 / 0 AT4G11120 549 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1)
Lus10012296
[exp]
545 / 0 AT4G11120 531 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1)
Lus10043229
[exp]
83 / 7e-17 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
Lus10011108
[exp]
75 / 3e-14 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00889 EF_TS Elongation factor TS
Representative CDS sequence
>Potri.014G172300.10 pacid=42762357 polypeptide=Potri.014G172300.10.p locus=Potri.014G172300 ID=Potri.014G172300.10.v4.1 annot-version=v4.1
ATGGCTCTATGTAGAAATGCTAAGGGTCCTCTTTCAAGAATGCTAACTACCAGGCCGGGTGTTGGCTATGGACAAAGTTATTCTACAGCAGCCATCGCCA
CTCCCATTTATCAGTCTGCAGATGACAAAACTGCATTTAGATATGCATTTGGAGTGCTTTCACGGCGATTTTGCTCTCAAACACCTCCTGCTGCAGCAGT
CCAAATGAGTCTCATTAAGCAATTGAGAGAACGGACTAGCGCTCCTATCAAAGATGTCAAGGCTTCTCTTGTCCAATGCAATTGGGATATTGAGGCGGCA
CAGACGGATTTGAGGAAAAGAGGGAAAGTTTTGGCAATGAAAAAGGCGGGTAGAGTTGCCACTGAAGGATTGCTTGCATTGGCTCAGAATGAGGGGAAGG
CTGCTGTTATTGAACTTAATTGTGAAACTGACTTTGTTGCCAGAAATGAAATTTTCCAATACTTGGCTTTAACTTTAGCAAAGCAGGCTTTGCTGGTTGA
AAATGCTTCTCAGCTGGTTTCGGGGGTCCACCCTGTAGGTCTCGAGTCTCTGGAGGAGTTGAAGTTAAATCTTGAACATCCAAAAATAAGTGGAGATACA
ACTGTTCAAAATGCAATTACAGAAGTGGCTGCAATGATGGGTGAGAATGTAAGACTCAGAAGGGGCTTTGTGATGTCTGCACCTTCACCCGGTGTTCTTT
CCACTTACCTTCATACTAGTCCTCAACCAGGTTTGGGCCGTATTGTGGGACTTTTATCTCTTGAGATAGAAGATGGAAATTCTCCGTTGGAGGCTCTCCA
GCGTGTTGGATCAGAATTGGCTGTGCATCTGGTAGCTGCAAAACCATTATTCTTGACTAAGGAAGGTGTTTCCTCTGATGCATTAGAGAGTGAACGTGAA
ATTCTTAAGTCTCAGGCAGAAAGTACAGGGAAGTCTCAAATGGCCATAGAGAAAATGGTGGAAGGCCGTTTGCGTAAATACTACGAGGAAGTTGTTTTGA
TGGAGCAAAAATTTGTTATGAATGATACAATGAACGTAAAGACACTGCTCAGCAATCTATCGAAGGAAGTGGGCTCGCCTGTGAAGATAGGTAACTTTTT
CAGAATGGAAGTTGGAGAGGGAATTCAAAGGGAGGAGGCGTTGGGTGCAGATGAACCAGTGGCTCAGGCAGCTTGA
AA sequence
>Potri.014G172300.10 pacid=42762357 polypeptide=Potri.014G172300.10.p locus=Potri.014G172300 ID=Potri.014G172300.10.v4.1 annot-version=v4.1
MALCRNAKGPLSRMLTTRPGVGYGQSYSTAAIATPIYQSADDKTAFRYAFGVLSRRFCSQTPPAAAVQMSLIKQLRERTSAPIKDVKASLVQCNWDIEAA
QTDLRKRGKVLAMKKAGRVATEGLLALAQNEGKAAVIELNCETDFVARNEIFQYLALTLAKQALLVENASQLVSGVHPVGLESLEELKLNLEHPKISGDT
TVQNAITEVAAMMGENVRLRRGFVMSAPSPGVLSTYLHTSPQPGLGRIVGLLSLEIEDGNSPLEALQRVGSELAVHLVAAKPLFLTKEGVSSDALESERE
ILKSQAESTGKSQMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTMNVKTLLSNLSKEVGSPVKIGNFFRMEVGEGIQREEALGADEPVAQAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11120 translation elongation factor ... Potri.014G172300
[exp]
0 1
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.010G242100
[exp]
2.00 0.8333
AT5G09570 Cox19-like CHCH family protein... Potri.009G078100
[exp]
8.12 0.7646
AT4G09670 Oxidoreductase family protein ... Potri.005G200200
[exp]
16.88 0.7612
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.008G017900
[exp]
23.28 0.8225
AT5G64670 Ribosomal protein L18e/L15 sup... Potri.016G002400
[exp]
26.87 0.7586
AT4G01310 Ribosomal L5P family protein (... Potri.014G089100
[exp]
29.39 0.7428 RPL5.2
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Potri.007G069300
[exp]
33.13 0.7193
AT1G14620 XTR2, EXGT-A2, ... decoy (.1.2) Potri.002G164800
[exp]
33.22 0.7601
AT5G23140 NCLPP7, NCLPP2,... nuclear-encoded CLP protease P... Potri.005G092600
[exp]
39.69 0.7702
AT3G52155 Phosphoglycerate mutase family... Potri.016G000900
[exp]
52.33 0.6992

Potri.014G172300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.