Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04039 168 / 4e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G217400 [exp] 267 / 3e-92 AT2G04039 171 / 2e-54 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012298 [exp] 138 / 2e-38 AT5G48330 525 / 0.0 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10016075 [exp] 103 / 1e-25 AT5G48330 447 / 1e-152 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11210 [poplar] [flax] DUF2996 Protein of unknown function (DUF2996)
Representative CDS sequence Show only first row Show all	>Potri.014G172800.1 pacid=42763128 polypeptide=Potri.014G172800.1.p locus=Potri.014G172800 ID=Potri.014G172800.1.v4.1 annot-version=v4.1 ATGACAACAAGAGGTGGAGCGGTGGGAGTTTCAAGCTTCCCGTCATCACCTTCATGTTTCAGGAAGAATGGCAGAGCCACCTCCTCTCCTCCACTCCATT TGCAGATGGCCAGCAAGTTGGTATCATCGCGAAGAAGAATTACGTGCTCTGCTGTGCAAGAATCGTCCACTTCCACCGTTGCTGCTGATGCAACGGAGGT AAAGCCAGTTGAAAAGAAGGCCCCAGCAAAACCCAAGAAAGCTCCTGCCAAGCCACTTGCTCAGCTGATGGAGGAGGATGTGATCCCTTCTCTGAAAGCT ACTCTTGAGGCTCAAGATGATATCACTGAACTCGAGCTATCATTCACAGACAACAGATTGGAAGGCTCCTTTCTACAGAAGGGCACTCCTTATTCATTTT GGGCATTCTTCCCTGATGGACTCACAGGTCCAAAAGGGTTTTCTCTATCATCCTATGGTTCAGGAGTCAGCACAGTTGAGCCTTTTCTGATCGATGAGAA GAAAATTACTGAAAAACACATCGTGTTTTGGGTGGAAAAACGCTTGGCAGCTCAAGGAATCATTCCTGTGTGGAAAGGGTAG
AA sequence Show only first row Show all	>Potri.014G172800.1 pacid=42763128 polypeptide=Potri.014G172800.1.p locus=Potri.014G172800 ID=Potri.014G172800.1.v4.1 annot-version=v4.1 MTTRGGAVGVSSFPSSPSCFRKNGRATSSPPLHLQMASKLVSSRRRITCSAVQESSTSTVAADATEVKPVEKKAPAKPKKAPAKPLAQLMEEDVIPSLKA TLEAQDDITELELSFTDNRLEGSFLQKGTPYSFWAFFPDGLTGPKGFSLSSYGSGVSTVEPFLIDEKKITEKHIVFWVEKRLAAQGIIPVWKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04039			unknown protein		Potri.014G172800 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	1.00	0.9795
AT3G56010			unknown protein		Potri.008G070700 [exp]	2.44	0.9703
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	2.44	0.9778
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	3.46	0.9760	Pt-AGT.2
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	3.46	0.9745
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	4.58	0.9702
AT3G56140			Protein of unknown function (D...		Potri.008G074300 [exp]	5.00	0.9504
					Potri.005G182750 [exp]	5.19	0.9681
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.010G193300 [exp]	5.47	0.9710
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.006G101500 [exp]	5.65	0.9572	FAD3.2

Compare expression of checked genes

Potri.014G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.