Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12750 1038 / 0 Homeodomain-like transcriptional regulator (.1) AT1G28420 153 / 3e-37 HD HB-1 homeobox-1 (.1) AT5G44180 144 / 2e-34 HD Homeodomain-like transcriptional regulator (.1.2) AT5G22760 47 / 0.0001 PHD finger family protein (.1) AT5G35210 47 / 0.0001 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT5G08630 45 / 0.0004 DDT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135500 [exp] 152 / 6e-37 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.011G057700 [exp] 150 / 2e-36 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.004G048675 [exp] 148 / 9e-36 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 145 / 9e-35 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.019G008541 [exp] 54 / 9e-07 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.004G138900 [exp] 47 / 9e-05 AT5G08630 652 / 0.0 DDT domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012302 [exp] 1090 / 0 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 1017 / 0 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10015325 [exp] 172 / 5e-43 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 161 / 9e-40 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10039870 [exp] 159 / 6e-39 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 157 / 2e-38 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10029550 [exp] 52 / 3e-06 AT5G08630 415 / 2e-136 DDT domain-containing protein (.1) Lus10020532 [exp] 51 / 8e-06 AT5G22760 731 / 0.0 PHD finger family protein (.1) Lus10004282 [exp] 50 / 1e-05 AT5G08630 645 / 0.0 DDT domain-containing protein (.1) Lus10039626 [exp] 50 / 1e-05 AT5G08630 633 / 0.0 DDT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02791 [poplar] [flax] DDT DDT domain
Representative CDS sequence Show only first row Show all	>Potri.014G173300.2 pacid=42762629 polypeptide=Potri.014G173300.2.p locus=Potri.014G173300 ID=Potri.014G173300.2.v4.1 annot-version=v4.1 ATGAAGAGGAAATCGCCACTCCAGCTTCAAGCCCTTCTGAAATTCTATGCAGCAGAGGATAAGTATCCTTCGCAAAGGGCCATGGAAGACCTTGCTGTGG TCTCGAACTTGACATTCAAGCAGGTTCGCGGATGGTTTATCGAGAAAAGGAGGAGTGAAAAAAGCAAAAATGAATTGATTGAACCACCACGTTTGACCAA GAAACTGTCAGTTTTCAAAGGAAGAAAGGGAGCTGCAGTTGCTTCTGATGCTAGAAAAATGCTTAAACAGTTGGAGCTGTCCGCTAGTTCTACAGATAAG TCGAACAAACCTTCATCTTCAAAGTACAAACATGCACCTTCAGAGGTTCAGGGTAGGATAGGCAAGAGGAAGAAGAAGTTGGTGCTCGTTCAGGATTTGC TGACTTCTGATTATATTCTGGGGAAGATATTTCGCAAAGATGGTCCTCCCCTTGGTTTGGAGTTCGATTCTCTTCCTACTAGAGCATTTCATGGTTGTGA AGATTCCAGAAATTCTCATCCTGCTCACCAAGAGAACCAAAGAGCAAACAAAAGGGGAAAGGTATCCATGTGTGCTGCTTTTGATGATCAAAATTGCAAC GAGAGTGCTCCAGTGAAGAAACATGGTATGGGGAAGGGTTTGATGACAGTATGGCGAGTAACAAATCCTGATGGTGGAGATTTTCCCACTGGCATTCATT GTGGTGGCTCTCAAATAACTGTTACACCTCAAATATCAACTCCCGTGCCACGGAAGCAGCCTCTTCAAAAAAAGAAGCGAAGACCGCCAGTGTCTTCTCT AGTTAAACAGAGAATGCTGCAAAAAGAATTACAGGAGAAGAGGAAGCCTTCTGTTAAAAGGAGGGAGGTGGAATCTAAAAGAGATGAGATCCAGAAGCAG TCCTTCAGGGAAAAATGTGAACTCGCTCTGGAAAGGTTAATGAATCAGGAACGCCTTAATCAATTTGCTATGCTAGTGGATGATGAAGAGCTAGAGCTGA GAGAGTTACGAGCTGGACCAAATCCACTAACATGTACGGAACACTTTGCGGCAAACAGACTCTTTGGCTGTTCCCTTTGTAAAGATTTGCTGGTGAAATT TCCTCCAAATTCTGTGAAGTTGAAGCAACCATTTGCTATGCAGCCTTGGGATTCTTCTCCAGAGGCTGTCAAGAAACTATTTAAGGTCTTTCATTTTCTT TACACCTATTCTGTTACAGTTGATATATGCCCATTCACTCTTGATGAGCTGGCTCAAGCATTCCATGATAAGGATTCCTTTTTACTTGGAAAAATTCATG TGGCCCTTCTGAAGCTTCTTTTATCTGATGTCGAAACAGAGATCAGTAGTGGACTCCTCCCTCATTTGAGCATATCTTGCAAGTTTCTCGCACTCCTTCA CTCAGTTGAAGATCAAGAATTTGTTGTGGAGTTCTGGAAAAATTCTCTCAACCCTCTAACATGGACTGAAATACTGTGTCAAGTTTTGATTGCAGCTGGT TTTGGTTCAAAGCAAGGTGGATTTCGTAGGGAAGTCCTCAGCAAGGAGATGAGCCTTATGGTGAAGTATGGCCTACATCCTGGAACTCTTAAAGGTGAAC TATTTCAACTTCTGTCAGTTCAAGGAAATAATGGATTGAAAGTTTCTGACCTGGCCAAGTCTTCTCAAATTGTGGAATTAAATCTTGCTGGCACAACTGA TGAGCTGGAGCTTTTGATCTGCTCAACTCTTTCAAGCGATATCACTTTATTTGAAAAGATTTCATCATCTACTTTTCGTTTGCGAATCAATACTCTTGCA AAGGAAGCCAGTGGTTTTCAATCAGATACCGAGGACTCCGGAATTGTTCACGAAGACTTCCATGATAATGGTGCATCTAGCAGCAGCAATTCTGATTGTG ATTCAGAAAATTCTAGTCCAAGAAATCTTAAGCTTATTGACTATCCCAAAAGAAAAAACAAGATGCTTACATTTGAGAATGAAATTGATGAGAGCCGTCC AGGAGAAGTGTGGTTGTTAGGACTAATGGAAGGTGAATATTCAGATCTAAGCATTGAAGAAAAATTGAATGGATTAGTGGCATTGATTGATCTTGTCAGT GCTGGGTCCAGTATTAGATTGGAGGATCTAGCAAAACCTACCGTTGAATCTGTTCCTAACATATACCACCATTGTTCCGGAGCAAAAATAAAAAGATCAT CATCAACGAAAGATAACGTGCCCAGGCCATCTTGGGTCCATGCTGGGCAAATAAATGTCACAAAAGAAGCGTACACATCATCCAAGTTTTTCCCTGTTGA TTCTTCAGTGTTATTCTCAAAGTTTGATGGCAAGGATAAACTTTCTGGCAAAGAGAAAGAGACAGAAGGGATGGGACTTGAGATCAATTTGCACCCGATG CAATCCATCTTTTTAGGGTCTGATCGTAGGTACAATAGGTACTGGCTTTTCTTGGGCCCATGTAACTCATATGACCCCGGCCATAAGAGAGTCTATTTTG AATCTTCTGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGGCTTTGCGTGCCTTATTGTCAGTTTTAGACGACAGAGGAAGACGGGAGGCCCTCCT AATTGAATCTTTGGAGAAAAGGGAAGCTTTTCTCTGCCAAGAAATGTCAAGTAAGATGGTAAATGATTCTGGAGTTGGGTACTTCACACAATCAGACCAG TCTGAGCTGGAAACAGTTAGAGAAGACAGTTCTTCTCCAGTGTCTGATGTAGACAACAACCTAACCCTTACTGACATTGCAAATGATTCTTTGCCGCCAA TGAGTGCAATAGTTCTTGAAACAGGAAAGAAGGGGAAAGAAGAAAACCAGAAATGGAACCGTCTCCGACAGTTTGATACCTGGATATGGAATTGCTTTTA CTGTGATCTTAATGCAGTAAAACGAAGTAAAAGGTCATATCTTGAATCACTTAGAAGATGTGAAACTTGTCATGACTTGTACTGGAGAGATGAGAAGCAT TGCAAGATCTGTCATACAACATTTGAGCTTGATTTTGATCTCGAGGAAAGATATGCCATCCATTCAGCTACTTGTAGACAGAAAGAGGACAATGTGATGT GTCCAAAGCATAAAGTTCTCTCATCAAAGTTGCAATCACTGAAAGCTGCAGTTTATGCAATTGAGACCGTTATGCCGGAAGATGCCTTGGTGGGTGCCTG GACAAAATCTGCTCATAGGTTATGGGTCAGACGGCTTAGACGCACATCTTCTTTGGCCGAACTTTTGCAGGTAGTTGCTGATTTTGTTGCTGCAATTAAT GAGGATTGGTTGTGTCAATGCAATCTTGCTCAAGGTTCCAGTACTTACATGGAAGAAATCATCACATGCTTTCCTACTATGCCTCAAACATCATCTGCAC TTGCACTTTGGTTGATGAAGTTGGATGAATTAATTTCTCCATATTTGGAAAAGATTTGA
AA sequence Show only first row Show all	>Potri.014G173300.2 pacid=42762629 polypeptide=Potri.014G173300.2.p locus=Potri.014G173300 ID=Potri.014G173300.2.v4.1 annot-version=v4.1 MKRKSPLQLQALLKFYAAEDKYPSQRAMEDLAVVSNLTFKQVRGWFIEKRRSEKSKNELIEPPRLTKKLSVFKGRKGAAVASDARKMLKQLELSASSTDK SNKPSSSKYKHAPSEVQGRIGKRKKKLVLVQDLLTSDYILGKIFRKDGPPLGLEFDSLPTRAFHGCEDSRNSHPAHQENQRANKRGKVSMCAAFDDQNCN ESAPVKKHGMGKGLMTVWRVTNPDGGDFPTGIHCGGSQITVTPQISTPVPRKQPLQKKKRRPPVSSLVKQRMLQKELQEKRKPSVKRREVESKRDEIQKQ SFREKCELALERLMNQERLNQFAMLVDDEELELRELRAGPNPLTCTEHFAANRLFGCSLCKDLLVKFPPNSVKLKQPFAMQPWDSSPEAVKKLFKVFHFL YTYSVTVDICPFTLDELAQAFHDKDSFLLGKIHVALLKLLLSDVETEISSGLLPHLSISCKFLALLHSVEDQEFVVEFWKNSLNPLTWTEILCQVLIAAG FGSKQGGFRREVLSKEMSLMVKYGLHPGTLKGELFQLLSVQGNNGLKVSDLAKSSQIVELNLAGTTDELELLICSTLSSDITLFEKISSSTFRLRINTLA KEASGFQSDTEDSGIVHEDFHDNGASSSSNSDCDSENSSPRNLKLIDYPKRKNKMLTFENEIDESRPGEVWLLGLMEGEYSDLSIEEKLNGLVALIDLVS AGSSIRLEDLAKPTVESVPNIYHHCSGAKIKRSSSTKDNVPRPSWVHAGQINVTKEAYTSSKFFPVDSSVLFSKFDGKDKLSGKEKETEGMGLEINLHPM QSIFLGSDRRYNRYWLFLGPCNSYDPGHKRVYFESSEDGHWEVIDTEEALRALLSVLDDRGRREALLIESLEKREAFLCQEMSSKMVNDSGVGYFTQSDQ SELETVREDSSSPVSDVDNNLTLTDIANDSLPPMSAIVLETGKKGKEENQKWNRLRQFDTWIWNCFYCDLNAVKRSKRSYLESLRRCETCHDLYWRDEKH CKICHTTFELDFDLEERYAIHSATCRQKEDNVMCPKHKVLSSKLQSLKAAVYAIETVMPEDALVGAWTKSAHRLWVRRLRRTSSLAELLQVVADFVAAIN EDWLCQCNLAQGSSTYMEEIITCFPTMPQTSSALALWLMKLDELISPYLEKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	0	1
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	2.44	0.9315
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.006G181100 [exp]	3.00	0.9228
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.010G136700 [exp]	4.79	0.8593
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	6.92	0.9006
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	7.41	0.8964
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	9.16	0.8947
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	9.79	0.8731
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G215500 [exp]	13.96	0.8280
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	14.96	0.8918
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	15.23	0.8834

Compare expression of checked genes

Potri.014G173300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.