Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12790 432 / 8e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT5G22370 175 / 2e-53 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G21800 84 / 3e-18 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015700 [exp] 184 / 6e-57 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 89 / 6e-20 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G103000 [exp] 88 / 1e-19 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036411 [exp] 485 / 1e-172 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10041086 [exp] 462 / 1e-166 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10018675 [exp] 184 / 9e-57 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007747 [exp] 177 / 8e-55 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019602 [exp] 86 / 7e-19 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040022 [exp] 86 / 9e-19 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13207 [poplar] [flax] AAA_17 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.014G174200.3 pacid=42763933 polypeptide=Potri.014G174200.3.p locus=Potri.014G174200 ID=Potri.014G174200.3.v4.1 annot-version=v4.1 ATGGGCTACGCGCAGCTTGTTATCGGCCCTGCTGGCAGTGGCAAGTCAACATATTGCTCCAGTTTGTACCGACACTGTGAAACCGCAGGGCGTTCAATAA ATATTGTGAACCTAGATCCTGCAGCGGAACAGTTTGACTATCCCGTGGCTATGGATATCAGGGAACTCATTTGTTTGGATGATGTTATGGAGGAACTTGG GTTGGGTCCTAATGGTGCTCTGATGTACTGCATGGAAGAACTGGAAGACAATCTGGATGACTGGTTGACTGACGAGTTGGATAATTACATGGATGATGAT TACCTGGTTTTTGACTGCCCAGGCCAAATAGAACTTTTTTCACATGTGCCAGTGCTCCGAAACTTTGTGGAGCATTTGAAGAGTAAAAATTTCAATGTTT GTGTTGTATACTTGCTTGATTCACAGTTTATCACTGATGTGACCAAGTTCATAAGTGGGTGTATGGCATCTCTTTCTGCTATGGTACAACTTGAATTGCC TCATGTTAATATCCTCTCCAAGATGGACCTTGTAACCAACAAAAGGGATATTGGAAAGTACTTGAACCCACAGGGTCAAGTTTTGTTGTCTGAATTGAAT CAACGCATGGCACCTCAATTTTTTAAGCTAAACAAAGCTTTGATTGATCTGGTCGATCAATATAGCATGGTGAGTTTTGTGCCTCTTGACTTGAGGAAGG AGAGCAGCATTCAATATATACTGTCCCAGATTGACAACTGCATTCAGTATGGAGAAGATGCAGATGTGAAGGTTAAAGATTTTGATCCAGAAGATATTGA TGATTAG
AA sequence Show only first row Show all	>Potri.014G174200.3 pacid=42763933 polypeptide=Potri.014G174200.3.p locus=Potri.014G174200 ID=Potri.014G174200.3.v4.1 annot-version=v4.1 MGYAQLVIGPAGSGKSTYCSSLYRHCETAGRSINIVNLDPAAEQFDYPVAMDIRELICLDDVMEELGLGPNGALMYCMEELEDNLDDWLTDELDNYMDDD YLVFDCPGQIELFSHVPVLRNFVEHLKSKNFNVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKRDIGKYLNPQGQVLLSELN QRMAPQFFKLNKALIDLVDQYSMVSFVPLDLRKESSIQYILSQIDNCIQYGEDADVKVKDFDPEDIDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12790			P-loop containing nucleoside t...		Potri.014G174200 [exp]	0	1
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	3.87	0.6971	Pt-ERF1.3
AT3G10915			Reticulon family protein (.1.2...		Potri.019G057400 [exp]	4.00	0.7279
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.009G012900 [exp]	17.66	0.6544
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	18.16	0.6616
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	22.80	0.7103
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	27.38	0.6621
AT3G55920			Cyclophilin-like peptidyl-prol...		Potri.010G189000 [exp]	28.00	0.6928
AT5G21140		EMB1379	embryo defective 1379 (.1)		Potri.004G195600 [exp]	37.58	0.6626
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	37.73	0.6406
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.009G134200 [exp]	47.94	0.6350

Compare expression of checked genes

Potri.014G174200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.