Plant FIBer expression Database

Potri.014G174300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48340 418 / 5e-142 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036410
[exp]
473 / 3e-163 AT5G48340 461 / 6e-159 unknown protein
Lus10041085
[exp]
374 / 9e-126 AT5G48340 371 / 5e-125 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G174300.1 pacid=42764362 polypeptide=Potri.014G174300.1.p locus=Potri.014G174300 ID=Potri.014G174300.1.v4.1 annot-version=v4.1
ATGGTTCAGTTGTTCTTAAGAGAAGAAGCTAAGAGGAAAGAAGACGTGCGCGAGGAAGATAGTGAACGTGCAAAGCGAATGATATGGCTTTTGAAGGAAC
TAGAATCAGTTATTTGGTCACTGATTACTCGATCAGAAGCACGTTTATGGCTTTACAACACTATATCATGCATCACCTCCCTTACTCCTTACCAAAAAAG
AGAGGTTTTTATGAGCTTATTGAGGACGAGGAGCAAGAAAGGTTTAGCTTCCCAGCTCTGGCAATTGATTTTTCAGAAGAGACCGCACGAAGCAGGAACA
CTTTTGGCCGAGAGAAGTTATGTGCTTGAGAAATTCTTTCAAGGAAATCAAACCCGTATATTGCAATGGTTTTCCAACTTCTCTAGTACTGGATTAAGGC
ATAAAAAAGGTGCCAAAGCGCTTTCCCAATTCGCGTTTGTGCATCGAAATAAATGTTGGGAGGAGCTTGAGTGGAAGGGTAAACATGGGCAATCCCCTGC
TGTGGTTGCAACCAAGCCACATTACTTTCTTGAGTTGGATATCCTACGAACGGTGGAAAATTTTCTTGAAAATGTGCCTGACTTTTGGACTTCTAGAGAG
TTTGCTGACTCGTTAAGAGATGGTGATATTTTTTTCGTCGAGACGAAATTCTTTGTAGATTTTTTTGTGGGGTTGATGTATGAAGAGGATTCAAGAGATG
TATGGGAAGTCATTAATGAGTTTCTTATGGAGGAGTCTTTCTCTGTTTTGTGTCAGCATCTACTTATCACACTTGAAGAGCAGGAGTTCTGTGCTTTTCT
TGAATCGCTTTGTAAATATTTGCATCGGAGAATGGAACCGAATGATTTTGGTGACTCTTGTCGCCTGCTTGAGTTTGTGCTCTCTAAATTCAGTGGTTAT
GAATCTATTGATCAGTTGCTTCTGTTGAATGCGGTTATTTATCGAGGACGTCAACTTCTAAAGCTTTTGCATGATGAAGAATCCCAGGAGGAACAGGCAA
AAATTAATGATATTGTGTCTCATATCTGCTCAATTTCAAGCAGTACTAACAGCTTTATCCCTATACTGAATGAGTGCCTAAAGATGAAAACCACTGGAGG
AATCAAGATCTTGGGGCTGCAGTCATGGGCCTTTCATTATGCATTATCAGAGAAATGCCAGAGTCCAGAGGCCTGGGAATCTTTATTTTCAAATAATGGT
ATAAGTTTCCGCATATCTGATAGATTCGCGCTGCTGCATGGTGATGAATTGTTGGAAGAAAATGACTCTGAAATGGATGATAGAGCATCAACTAAAAGAA
AGAGCAGGAAGAAAAGGAAAAGTAAAAAGAAAAGGAAAAGGAACTCCGATGATGACGACAGCTATGACCATGGTCTGCTGGATTTAGACACATCAAATAG
TAAACTAGGTTTGCAAGCTAGGGATGGGAGTTGGTTGCTCTCAACAGATGGGTTTTCTGCATCATGGACTAACGCAGATCTGCCGGAACACCTCTCAAAG
TTTTGCTTTTCCACGTGGATGAAGTGGGCATTTGCTAAGTGGAGGAACGTGGCTTAA
AA sequence
>Potri.014G174300.1 pacid=42764362 polypeptide=Potri.014G174300.1.p locus=Potri.014G174300 ID=Potri.014G174300.1.v4.1 annot-version=v4.1
MVQLFLREEAKRKEDVREEDSERAKRMIWLLKELESVIWSLITRSEARLWLYNTISCITSLTPYQKREVFMSLLRTRSKKGLASQLWQLIFQKRPHEAGT
LLAERSYVLEKFFQGNQTRILQWFSNFSSTGLRHKKGAKALSQFAFVHRNKCWEELEWKGKHGQSPAVVATKPHYFLELDILRTVENFLENVPDFWTSRE
FADSLRDGDIFFVETKFFVDFFVGLMYEEDSRDVWEVINEFLMEESFSVLCQHLLITLEEQEFCAFLESLCKYLHRRMEPNDFGDSCRLLEFVLSKFSGY
ESIDQLLLLNAVIYRGRQLLKLLHDEESQEEQAKINDIVSHICSISSSTNSFIPILNECLKMKTTGGIKILGLQSWAFHYALSEKCQSPEAWESLFSNNG
ISFRISDRFALLHGDELLEENDSEMDDRASTKRKSRKKRKSKKKRKRNSDDDDSYDHGLLDLDTSNSKLGLQARDGSWLLSTDGFSASWTNADLPEHLSK
FCFSTWMKWAFAKWRNVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48340 unknown protein Potri.014G174300
[exp]
0 1
AT1G03910 unknown protein Potri.006G118700
[exp]
3.31 0.8482
AT5G64270 splicing factor, putative (.1) Potri.017G050800
[exp]
4.00 0.8414
AT3G16890 PPR40 pentatricopeptide (PPR) domain... Potri.008G108300
[exp]
4.58 0.8219
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Potri.010G237100
[exp]
6.00 0.8136
AT5G15570 Bromodomain transcription fact... Potri.017G094900
[exp]
9.48 0.7722
AT5G03800 EMB166, EMB175,... embryo defective 1899, EMBRYO ... Potri.016G096400
[exp]
9.79 0.8167
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.010G029000
[exp]
12.24 0.8147
AT3G09560 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDRO... Potri.006G214800
[exp]
22.80 0.7874
AT1G02420 Pentatricopeptide repeat (PPR)... Potri.007G079400
[exp]
23.43 0.7932
AT4G11560 bromo-adjacent homology (BAH) ... Potri.003G127400
[exp]
26.85 0.7960

Potri.014G174300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.