Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39780 370 / 1e-130 RNS2 ribonuclease 2 (.1.2) AT1G14220 134 / 4e-38 Ribonuclease T2 family protein (.1) AT2G02990 130 / 8e-37 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G26820 114 / 1e-30 RNS3 ribonuclease 3 (.1) AT1G14210 105 / 6e-27 Ribonuclease T2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168700 [exp] 129 / 3e-36 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086800 [exp] 125 / 4e-35 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.008G086700 [exp] 124 / 1e-34 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.013G134400 [exp] 60 / 3e-10 AT2G02990 82 / 4e-18 ribonuclease 1 (.1) Potri.010G168600 [exp] 57 / 6e-10 AT1G26820 147 / 1e-45 ribonuclease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041084 [exp] 324 / 2e-111 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10036409 [exp] 273 / 3e-92 AT2G39780 276 / 5e-94 ribonuclease 2 (.1.2) Lus10012823 [exp] 127 / 1e-35 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10030468 [exp] 125 / 7e-35 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10027978 [exp] 120 / 8e-33 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10035882 [exp] 89 / 4e-21 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10003110 [exp] 89 / 6e-21 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10035881 [exp] 89 / 6e-21 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10015409 [exp] 82 / 2e-18 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1) Lus10023371 [exp] 69 / 1e-13 AT1G14220 76 / 1e-16 Ribonuclease T2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [poplar] [flax] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Potri.014G174400.1 pacid=42763774 polypeptide=Potri.014G174400.1.p locus=Potri.014G174400 ID=Potri.014G174400.1.v4.1 annot-version=v4.1 ATGGCATCTCTCTCTGTCCAAACGCTGCTCGTGCTGCTCGTCTTCGTAACGGCATCGTATTGCATGATCGAGGAAGCGAGTGCAATAGAAGGACAGAGGG AATTCGATTACTTCGCCTTGTCTCTGCAATGGCCTGGCACCTACTGCCGCCACACCCGCCATTGCTGCTCCCAAAATGCTTGTTGCCGAGGCGCAAATGC TCCGACTGAATTTACAATCCATGGTCTCTGGCCTGACTATAATGATGGAACGTGGCCTGCGTGTTGTACTCGATCCGATTTCAATGAAAAGGAGATCTCC ACATTGCATGATGCTCTAGAGAAGTATTGGCCATCTCTTAGTTGTGGTTCACCATCATCTTGCCATGGTACAAAAGGATCCTTTTGGGCACATGAGTGGG AGAAGCATGGAACTTGCTCCTCTCCAGTTGTTCACGATGAATATAGTTACTTTTCAACAACCCTCAATGTCTACTTTAAATATAATGTTACAAAAGTACT GAATGAAGCAGGATATGTTCCTTCAAATAGTGAGAAATATCCTCTTGGAGGCATTGTATCTGCTATCGAGAATGCTTTCCATGCAACCCCACAACTGGTT TGCTCAAAGGGGGATTTGGAGGAACTTCGTTTATGCTTCTATAAGGATTTCAAGCCTCGGGACTGTGTAATTCAAAATGACATGTACACTTCAAAGAGCT CATGTCCGAAGTATGTTAGCTTGCCAGCATATGTTTCATTGGGGCTTGACGGAGCTGGAACAGAAGTCCCGTGGGTGCCTGATAATGAAGGTGATGAGGC TCTTTGA
AA sequence Show only first row Show all	>Potri.014G174400.1 pacid=42763774 polypeptide=Potri.014G174400.1.p locus=Potri.014G174400 ID=Potri.014G174400.1.v4.1 annot-version=v4.1 MASLSVQTLLVLLVFVTASYCMIEEASAIEGQREFDYFALSLQWPGTYCRHTRHCCSQNACCRGANAPTEFTIHGLWPDYNDGTWPACCTRSDFNEKEIS TLHDALEKYWPSLSCGSPSSCHGTKGSFWAHEWEKHGTCSSPVVHDEYSYFSTTLNVYFKYNVTKVLNEAGYVPSNSEKYPLGGIVSAIENAFHATPQLV CSKGDLEELRLCFYKDFKPRDCVIQNDMYTSKSSCPKYVSLPAYVSLGLDGAGTEVPWVPDNEGDEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Potri.014G174400 [exp]	0	1
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Potri.006G059300 [exp]	4.79	0.9221
AT1G72020			unknown protein		Potri.019G081700 [exp]	5.47	0.9070
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	8.48	0.9097
AT1G04630		MEE4	maternal effect embryo arrest ...		Potri.003G173800 [exp]	9.94	0.8976
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	11.13	0.9049
AT3G04780			Protein of unknown function (D...		Potri.013G039500 [exp]	12.96	0.9031
AT2G44360			unknown protein		Potri.001G230100 [exp]	14.89	0.8562
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.004G156900 [exp]	16.97	0.8997	Pt-RER1.2
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.008G052100 [exp]	17.91	0.8443
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	20.37	0.9034	AP19.1

Compare expression of checked genes

Potri.014G174400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.