Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25500 674 / 0 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 501 / 1e-161 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 448 / 3e-141 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 355 / 1e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 341 / 2e-101 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G48360 324 / 2e-96 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 308 / 8e-91 AFH3 formin 3 (.1.2) AT3G07540 295 / 2e-85 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 259 / 2e-73 ATFH8 formin 8 (.1) AT1G59910 255 / 1e-70 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240232 [exp] 983 / 0 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 609 / 0 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 580 / 0 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 478 / 1e-152 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 374 / 3e-113 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 360 / 8e-108 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 355 / 4e-106 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 355 / 5e-106 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 326 / 3e-96 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002149 [exp] 731 / 0 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 727 / 0 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 462 / 1e-145 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 460 / 7e-145 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 456 / 5e-144 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 375 / 1e-114 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 352 / 3e-106 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 350 / 1e-105 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 348 / 1e-104 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 340 / 1e-100 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.014G174700.1 pacid=42764399 polypeptide=Potri.014G174700.1.p locus=Potri.014G174700 ID=Potri.014G174700.1.v4.1 annot-version=v4.1 ATGCCCACCTCTTTCCTCGCTTCCTCCTTCATCACTATATCACTCTTCCTCCTATCCTACGCACCCCTCCACTTATCCTCCTCCACCACCACTAACCGTC GGATTCTTCATCAACCATTCTTCCCACAGGACTCCATTCCTCCCACCGAACCCCCATCTCCTTCCCCACCTTCCCCACCATCGCCACCACCGCCACCATC CCAAATCCCATTTCCCACTCCCACCCCTAACCAATCCCCCTTTTTCCCTTCCTACCCTTCCCCTCCACCACCTCCGTCCCCTACCGCATTCGCATCTTTC CCAGCCAACATCTCCTCTCTCATCCTCCCTCAGTCCTCTAAACCCAAACCCACTTCCCAAAAACTCCTCGTCGTCGCCATCTCGGCTGTCATCTCCGCTC TCATTGTCTTGGGCATCATCGCCTTTTATTACGCTCGCCGCCGGAGAAACCAAACTAACTTCTCCGACAACAAGACTTATGGTGGATCCAGTAACAGTAA CAGACTCCAAGTAACTGCAGATACGAGAGCAAGTAGCAACAGCCATAAACTAAGAACCTCTTCAACTAGTTCCGAGTTTCTTTACTTGGGAACTTTAGTA AATTCAAGGAGGTTAGATGAAAGCTCCAATGACAACACTAATGTCAGGTCTGATCATCATAAACTGGAGTCCCCGGAGCTCCGGCCCCTTCCACCGCTCA ACAGGGATAATTCGAGGCAGAATTATGGAAGTGGCAATTTTGATAGGGATGGGAATGAAGAGGAGGAGGAAGAGGAGTTTTACTCACCGCGAGGATCTTC AGGCGGTAGAGAAAGCTCCAGCGGGTCTAGAAGAGGTTTTTCTGCTGCTGCTGCAGGTTTTGATGCAAAAAGTATTGAATCTTCGAGCTCGCATTCGTCT TCCACTTCAGCTTCTCCTGCTCGGTCTCATTCTCTCAGTATTTCTCCGCCAGTAAGTTTGAGTCCCAGACCAAAATCGCCGGAATCTGTTACTGTACTTG CTGCTCAATCGTTGCCACCACCATCGCCATCAATAATGGATGCTCATAATGAGAGGGAATCTTCTTCATCATCTTGTGCTTCATCTCCATATGCTTCGCC TAAAATTACACTAAATTTGGAAAGAAATGTACTGTCTTCGGCTTCTACTTCTCCTAGAGTGTTGAATGATTTGGATCGAAACAATGTGATTATGCGGTCT CCATCTTTATCTCCAGCTAGAATATTGAATAGCAATTTGGCCCAAAATAGACCTTCTAGCTCACCTTCTTCTGTTTCAACTTCACCTGATAGAGTACTGA ACGATTTGGCTCGATTTAATGTGAATTCTCCATCGTTGTCCTCTGTTTCTTCATCACCTGATAGAGATTTGGAAAGGACCCCATCACCGAAAATATCAAT TGATTTGGATCGAACTGCGCAGTCTCCTTCACTGTCTGTTGCTTCTTCACCAGAAAGAGGTTTCGAGAAGAGCCTACCTACATCTCCAATAGTTTCAAAT GTTTTTGATCGAATTGAGATGTCTCCTTCATTGTCTGTAGCTAAGAGCACATTTTCATCTCCCAGAATCTCGAATGTTTCAGATCATACTAGGATGTCTC CCACATTATTGTCTTCACCTTCTTCTTCGCCGGATAGAAAGAGCCCAGATGTATCACCAACAATGACTTCTAGTGTTTTGGGTCTAAATGCAAGAATTAG TAATGTTTTCGAGCAGCTTATGTCAGTTCCGCCTCCTCCGCCCCCGCCCCCGCCTCCGCCTCCGCCAATGCTGCTACCGCGAAGACAATGGGAATCTCCC AGTGTTAATGCATTATCAACACCAACTGACCAGCCAATTTCAAAGCCTCCAGCGCTTATACCACCCTCAAGGCCTTTTGTATTACAAAGCACAACCAATG TATCGCCAATTGAGTTGCCACCTAGTTCTAAAACAATGGAGGATGCCGAGGAAACTCCTAAACCAAAGTTAAAGCCCTTGCATTGGGATAAAGTTAGAGC AAGCTCTGATCGTGAAATGGTGTGGGATCATCTGAGGTCCAGTTCTTTTAAATTGAACGAGGAAATGATTGAGACATTGTTCGTCGTCAATACGCCAAAA CCAAAGCCAGCCACTCCTCATTCAGTTAGCCTAACACCCAACCAAGAAAATAGGGTACTTGATCCCAAAAAGGCGCAGAACATTGCAATTTTGCTCCGGG CACTCAATGTGACAATTGAGGAAGTTTGTGAAGGCCTTTTAGAAGGAAATGTTGATGCTCTAGGAACTGAACTTCTAGAAAGTTTATTGAAGATGGCACC TACCAAAGAAGAGGAGCGTAAATTGAAAGAATACAAAGATGATTCTCCAACCAAGCTTGGTCATGCTGAGAAATTCCTGAAGGCAGTGATTGATGTACCT TTTGCATTTAAACGAGTGGATGCAATGCTTTACGTAGCCAATTTTGAGTCCGAGGTTGAATACCTCAAAAGGTCCTTTGAAACTCTGGAGGCAGCCTGTG AAGAACTGAGAAATAGCAGGATGTTTTTGAAACTTTTAGAAGCTGTGCTCAAGACAGGAAACCGCATGAATGTTGGCACTAACCGTGGTGATGCCCATGC CTTCAAGCTTGACACGCTCCTTAAGCTTGTTGATGTCAAGGGTGCAGATGGAAAGACCACACTCTTGCATTTTGTTGTACAGGAAATTATAAGAACCGAA GGTGCTCGTCTCTCTGGGACCAACAACACTCCAAACTCCACTTCCAGTGAAGATGCCAAGTGTAGGAAGCTCGGCCTGCAAGTTGTTTCTGGTCTGAGTT CAGAGCTCGGTGATGTGAAGAAAGCAGCTGCTATGGATTCTGATGTACTTAGCAGTGATGTCTCCAAGCTTTCTAGAGGGATTGAGAATATCAGCGAGGT GGTGCGATTAAATGAAACATTGGGAATGGTGGAAAGCTGTCAGAGATTTTCAGAGTCAATGACGAGGTTCATGAAAATGGCCGAGGGGGAGCTTATAAGG ATTCAAGCCCAAGAAAGTGTTGCTTTGTCACTAGTAAAGGAGATCACGGAATACTTCCATGGTAATTCAGCCAAGGAAGAGGCTCACCCCTTCCGAATCT TCATGGTGGTCAGAGACTTTCTTAGTGTTCTTGATCGTGTGTGCAAAGAAGTTGGTATGATAAATGAGCGAACAGTTGTTAGTTCTGCCCATAAATTTCC AGTTCCTGTTAATCCAATGCTTCCAGTTCCTGTAAATCCAACGCTGCCACAGGTTTTTTCTGGATCCAATGCAAGGAAGCAGTGTGATTCCTCCGATGAT GAGAGTGCATCTCCTTAA
AA sequence Show only first row Show all	>Potri.014G174700.1 pacid=42764399 polypeptide=Potri.014G174700.1.p locus=Potri.014G174700 ID=Potri.014G174700.1.v4.1 annot-version=v4.1 MPTSFLASSFITISLFLLSYAPLHLSSSTTTNRRILHQPFFPQDSIPPTEPPSPSPPSPPSPPPPPSQIPFPTPTPNQSPFFPSYPSPPPPPSPTAFASF PANISSLILPQSSKPKPTSQKLLVVAISAVISALIVLGIIAFYYARRRRNQTNFSDNKTYGGSSNSNRLQVTADTRASSNSHKLRTSSTSSEFLYLGTLV NSRRLDESSNDNTNVRSDHHKLESPELRPLPPLNRDNSRQNYGSGNFDRDGNEEEEEEEFYSPRGSSGGRESSSGSRRGFSAAAAGFDAKSIESSSSHSS STSASPARSHSLSISPPVSLSPRPKSPESVTVLAAQSLPPPSPSIMDAHNERESSSSSCASSPYASPKITLNLERNVLSSASTSPRVLNDLDRNNVIMRS PSLSPARILNSNLAQNRPSSSPSSVSTSPDRVLNDLARFNVNSPSLSSVSSSPDRDLERTPSPKISIDLDRTAQSPSLSVASSPERGFEKSLPTSPIVSN VFDRIEMSPSLSVAKSTFSSPRISNVSDHTRMSPTLLSSPSSSPDRKSPDVSPTMTSSVLGLNARISNVFEQLMSVPPPPPPPPPPPPPMLLPRRQWESP SVNALSTPTDQPISKPPALIPPSRPFVLQSTTNVSPIELPPSSKTMEDAEETPKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPK PKPATPHSVSLTPNQENRVLDPKKAQNIAILLRALNVTIEEVCEGLLEGNVDALGTELLESLLKMAPTKEEERKLKEYKDDSPTKLGHAEKFLKAVIDVP FAFKRVDAMLYVANFESEVEYLKRSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTE GARLSGTNNTPNSTSSEDAKCRKLGLQVVSGLSSELGDVKKAAAMDSDVLSSDVSKLSRGIENISEVVRLNETLGMVESCQRFSESMTRFMKMAEGELIR IQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSVLDRVCKEVGMINERTVVSSAHKFPVPVNPMLPVPVNPTLPQVFSGSNARKQCDSSDD ESASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	0	1
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	1.73	0.7539
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	5.29	0.7108
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	6.00	0.6959
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	7.87	0.7209
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	9.21	0.7078
AT1G48560			unknown protein		Potri.003G188600 [exp]	10.67	0.7130
AT3G19650			cyclin-related (.1)		Potri.001G295000 [exp]	12.48	0.6276
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	13.26	0.6817
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.013G144600 [exp]	13.74	0.6645
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.019G033300 [exp]	15.49	0.7061	TBP1.2,GTF902

Compare expression of checked genes

Potri.014G174700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.