Plant FIBer expression Database

Potri.014G174800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48370 690 / 0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
AT2G30720 552 / 0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G240100
[exp]
805 / 0 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Potri.017G009800
[exp]
568 / 0 AT2G30720 571 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002148
[exp]
703 / 0 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Lus10008741
[exp]
385 / 2e-132 AT5G48370 360 / 3e-123 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Lus10008740
[exp]
233 / 1e-75 AT5G48370 232 / 5e-76 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.014G174800.1 pacid=42762349 polypeptide=Potri.014G174800.1.p locus=Potri.014G174800 ID=Potri.014G174800.1.v4.1 annot-version=v4.1
ATGAAGGAGGAATCCAGTTCCCAAAATTTGGAGAAGGAAATGGAATTCAATTCCTCCTCTCCAAGAACCATCCCTGTAGTCTCCACATTGACCAACCCCT
TTGACAACAACAACTCCCTTGCTTGCGTCAACGGCCACACACGAAAGCCCATAGCTTTATGGCCAGGAATGTACCATTCACCAGTAACCAATGCTCTGTG
GGAAACAAGGTCCAAGACCTTAGAAAGACTTCTTGACCCACCTGAAGATGCAACTCCACAGAGTGAATTGTTGACTAAAACTCCAAAACAAAGCCGTACT
AGAATCTTGTATGGTTTTTCTACTGATTATATTTTAAGAGAGCAGTATAGGGATCCTTGGAATGAGGTTAGGATTGGTAAACTGCTTGAGGATCTTGATG
CTTTGGCTGGCACCATCTCTGTCAAGCACTGTTCCGACGATGATAGCACAGCAAGGCCACTGCTGCTGGTGACTGCTTCCGTGGATAAGATTGTCCTGAA
GAAGCCAATTAGTGTTGACGTCGATCTTAAAATAGTTGGTTCTGCCATATGGGTTGGTCGGTCATCAATTGATATTCAACTGGAGGTCATGCAGTCCACA
AAAGAGGGCTCTGACACTTCAGACTCCGTAGCTTTGACAGCCAACTTCATATTTGTGGCCCGTGACTCTAAGACTGGGAAAGCTGCTCCAGTGAATAGGC
TGTCGCCTGAAACAGAGAAGGAAAGGTTACTTTTTGAAGAAGCTGAAGCAAGGAGCAAGCTCAGAAAGAGGAAGAGTGTAGAAAAAAGGAAGGAAATTCA
GAATGGGGAGGCAAATAGACTTGAAGCATTGTTGGCTGAGGGACGAATCTTCTGTGACATGCCAGCCTTAGCGGACAGAAACAGCATTCTTCTAAGGGAT
ACATGCCTTGAAAACTCTTTAATTTGCCAGCCACAGCAAAGGAACATACATGGTCGAATCTTTGGAGGGTTTTTGATGCATCGGGCTTTTGAGTTGGCTT
TCTCAACTGCTTATGCCTTTGCTGGATTGGTTCCTTACTTTCTTGAAGTTGATCATGTTGATTTCTTAAGACCTGTTGATGTTGGAGACTTCCTGCGCAT
CAAATCCTGTGTTCTTTACACGGAACATGAAAACTCAGAAAAGCCTCTGATCAACATTGAAGTTGTTGCCCATGTTACCAGGCCTGAATTGAGGTCCAGT
GAGGTATCGAATACATTTTACTTCACTTTCACTGCACGTCCAGAGGCAAAAGCCACAAATAATGGATTTAGGATCCGGAAAGTGGTTCCTGCAACAGAGG
AAGAAGCGCGCCGTATTTTAGAGCACATGGATGCAGAGTCCATGCAATCTGGCGAAGGCAAAAGCAAATAG
AA sequence
>Potri.014G174800.1 pacid=42762349 polypeptide=Potri.014G174800.1.p locus=Potri.014G174800 ID=Potri.014G174800.1.v4.1 annot-version=v4.1
MKEESSSQNLEKEMEFNSSSPRTIPVVSTLTNPFDNNNSLACVNGHTRKPIALWPGMYHSPVTNALWETRSKTLERLLDPPEDATPQSELLTKTPKQSRT
RILYGFSTDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTARPLLLVTASVDKIVLKKPISVDVDLKIVGSAIWVGRSSIDIQLEVMQST
KEGSDTSDSVALTANFIFVARDSKTGKAAPVNRLSPETEKERLLFEEAEARSKLRKRKSVEKRKEIQNGEANRLEALLAEGRIFCDMPALADRNSILLRD
TCLENSLICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGLVPYFLEVDHVDFLRPVDVGDFLRIKSCVLYTEHENSEKPLINIEVVAHVTRPELRSS
EVSNTFYFTFTARPEAKATNNGFRIRKVVPATEEEARRILEHMDAESMQSGEGKSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48370 Thioesterase/thiol ester dehyd... Potri.014G174800
[exp]
0 1
AT1G06540 unknown protein Potri.005G201300
[exp]
2.00 0.9347
AT3G45310 Cysteine proteinases superfami... Potri.006G141700
[exp]
2.64 0.9414 Pt-ELSA.1
AT5G01950 Leucine-rich repeat protein ki... Potri.016G140200
[exp]
3.31 0.9196
AT2G19130 S-locus lectin protein kinase ... Potri.013G149500
[exp]
4.47 0.9270
Potri.005G223450
[exp]
7.14 0.9305
AT5G58660 2-oxoglutarate (2OG) and Fe(II... Potri.001G278200
[exp]
7.48 0.9258
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.019G011800
[exp]
12.96 0.9089
AT4G00550 DGD2 digalactosyl diacylglycerol de... Potri.014G079400
[exp]
13.85 0.9065 Pt-DGD2.1
AT4G25160 U-box domain-containing protei... Potri.004G233000
[exp]
14.00 0.9167
AT1G64950 CYP89A5 "cytochrome P450, family 89, s... Potri.007G088154
[exp]
15.49 0.9155

Potri.014G174800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.