Plant FIBer expression Database

Potri.014G175350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48390 1253 / 0 ATZIP4 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011130
[exp]
1206 / 0 AT5G48390 1125 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10043031
[exp]
731 / 0 AT5G48390 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10043032
[exp]
306 / 5e-97 AT5G48390 256 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF08631 SPO22 Meiosis protein SPO22/ZIP4 like
CL0020 TPR PF13181 TPR_8 Tetratricopeptide repeat
Representative CDS sequence
>Potri.014G175350.2 pacid=42764750 polypeptide=Potri.014G175350.2.p locus=Potri.014G175350 ID=Potri.014G175350.2.v4.1 annot-version=v4.1
ATGAAAATCACCGAGATGTACTCGCCGGATCTCCGGAAACCAAACCACGACAACCAATTTATTCAGTCCAACCACCTCCACCAACACCTCCTCTCTCAGA
TCGAATCCCTAATCATACAAACCGAAAACCTCTCCCCTAACTACCATTCCTTACCGGAAACTATCTCCTCAGATCTCCGCCAAACCCTAACTCACCTCAC
TCAACTCCCTCCATTTCCTAACTCACTCAAGCTCCATATCTGGAAGCTTGCCTACCGCCTCTGGAATGCCTGCATCGACATCTCCAATGCCGTCTCCATC
CTCCCTTCCTCCCCCTCCCCCTCCCACTCCTCCTCCTTTGTCGAAAACCACGCCAAGCTCCGTCACATCGCCGCCGATATGATCTCCCTCGCCGGAGACG
TCACCAGCGTTACCTCTCCTGCTGTCAAATCCGCCTCTTTCTACCTCAAGACCGGCCTCATCTGGCATGATCTGAGAACATTTGATCTCGCGTCGTCCTG
CTTTGAGAGAGCTACTGATATCGTTTCAAAGCTCGACATAGCCGCAATATCGGATTCGGGAGAGAGAAAAATGCTGTTAGATTTAAATCTCGCGAGATCT
CGAACTGCCTGGGAGATATCGGACCGAAACCTCGCGATAATACTGTTAACTCGGGCGAAAACTCTCCTCTTCGGGTCATCAGATCACTACAAACAACTAG
CCAATCAGTACTTGATATTTGGAAAGAGCGTGTTATCCAAAAACAACGATACCGATAACAGTTTAAAAGAAGCTTTGAAGCTAATGAGCGAAGCTCTGGA
TTTAAGTGAGAAGGGATCCAGTGCAGCGAGAACAAGAGAGCAAATCATGGAACTCAAGGAGTTAAGATCAAAATCACTCCGATTCATCTCGGCTGTTCAT
TTACAAAAAGGAGAGTACGAGAGTGTGATTAAATGCGTTAAGGTATTGAGGGAGGGAAATGGTGGTGGTGATGGCGGGGACCACCATGCCAGTCTCCCTG
TTTTGGCAATGAAGGCGTGGTTGGGTTTGGGGAGGTATGGAGAGGCAGAGAAGGAGCTGAGGGACATGGTTGTCAATAAGGGAATTCCTGAGAGTGTTTG
GGTTTCTGCAGTAGAGGCGTACTTTGATGCTGCTGGGACTGCAGGGGCCGAGACAGTGAAGGGAGTGTTTTTGGGGCTTTTAGGAAGGTGCCAGGTGAGT
GCCAGAGCTGCATTCAGGGTGGCGAATAGAGTGCTTGGGTGTGTTGGAAGTGGTGGAGAAGGTTCGAGTCTAAGGACAAAAGTGGTGGCAGATTTGGTAT
CTGATGAGAGAGTGGTGGCTCTTTTTGCTAGCGAGGCGACTGCTAAGGAAAGGGCGGCAATGCATGCTGTTCTTTGGAACCGTGCTTCTGAACATTTTAG
ATCAAAAGATTACGAGACAAGTGCAGTGATGTTTGAGAAATCACTGCTCTATATATCACATGACATCGAGAACAGAATTCTCCGTGCAAAGGGCTTCAGA
GTTTTGTGTCTATGCTATCTTGGCCTCTCCCAGTTTGATAGAGCTCAAGAATACATTAACGAAGCTGAAAAGCTTGAGCCCAACATAGCATGTGCTTTTC
TTAAGTTCAAAATCTATCTGCAAAACAACGACCATAATGGTGCTATCAATCAGGTCCAGGCAATGAAAACTTGCTTTGATTTCACTCCAGACTTTCTCTC
CCTTTCAGCTCATGAAGCTGTTGCTTGCCATGCTCTTCCTGTTGCTATTTCCTCTCTATCCAATCTCCTGAGCTTCTACACCTTGGGAAGATCCATGCCA
ACAACAGAAGTTGTAGTGCTACGCACATTGATCACAATCCTCATTCAAGACCCTGGAAACGAGGTAGAAGTCCTCAAATTCATGAAAAGGGTTCACGACC
GGGCATCTGAGCTTGGGACAGAGTGCTTTTTTGGAAAAGAGGAGACTGGCAGACGAGAAAAAAACTGGTTTGCTGTGACTTCATGGAACACTGGGACTAA
ATGTGGAAAGGAGAAGAAATATGAATTATGTGCAGAATTTTTGAGACTGGTATCAGGATTTTATGGTCTCGTTGATTGTCAAGAGGAAGAACACAGTATT
ATGGTCTGCAAGTCATTGATATTGTCTGTCTCAGCCATGGTGGCTTCAGAGAATCAAAAGAAGACTGCATTGACGGACTCTGAAGTGAAACAAGCTGTTG
AACTGCTAGATAGAGCAGGGAAGATCCTAACTTCAATCTCAGCAGGAACCCAACTTGGTGGTGACAAAATCACCACAGTTGAGCCAGACCTCTTCTTCGT
GCACACCTTCAATGCCTACGATATATACGGCAGACTTGGTAATTTTGGGCCACAGCAACAGCTCCACTTCGTAAAGAGTTTTGCCACCTCAAAGGCATGC
GATCCCAAGTACCTTCTTCAAATTGGTCTTAGCACCTCACAGGGTCCGCGGTCTAACCCTGAAGTAGCCAGCTTTGCTCTAAACGAGTGTCTTTCAGCTC
TCCTTTCCTCCCCCTCACCGGACTACCCCGACGTTGCTCTTGTAGTTCGAAGGCTGATTGCATTAGCAAGCATTCACAAAGGTGATTCAGATGATAATGC
TGTGCAGAATCTGTACAAGCAAGCATATAGGATAATGGTCGGGTTAAAAGAAGGCGAGTATCCCACGGAGGAGGGAAAATGGCTTGCAATGACTGCATGG
AACAGGGCGGCAGTCCCAGTGAGGCTAGGGCAGGTTGATGCGGCGCCGAGGTGGATGGATGCTGGGTTGGAGCTTGCAAGGGAGGTTTCAGGGATGGAGA
CTTACAGGGCATGCATGGAGGATTTTGCAACTGCTTTTAATAAGAAATCTCATTCGCACAGTAATGGTTAA
AA sequence
>Potri.014G175350.2 pacid=42764750 polypeptide=Potri.014G175350.2.p locus=Potri.014G175350 ID=Potri.014G175350.2.v4.1 annot-version=v4.1
MKITEMYSPDLRKPNHDNQFIQSNHLHQHLLSQIESLIIQTENLSPNYHSLPETISSDLRQTLTHLTQLPPFPNSLKLHIWKLAYRLWNACIDISNAVSI
LPSSPSPSHSSSFVENHAKLRHIAADMISLAGDVTSVTSPAVKSASFYLKTGLIWHDLRTFDLASSCFERATDIVSKLDIAAISDSGERKMLLDLNLARS
RTAWEISDRNLAIILLTRAKTLLFGSSDHYKQLANQYLIFGKSVLSKNNDTDNSLKEALKLMSEALDLSEKGSSAARTREQIMELKELRSKSLRFISAVH
LQKGEYESVIKCVKVLREGNGGGDGGDHHASLPVLAMKAWLGLGRYGEAEKELRDMVVNKGIPESVWVSAVEAYFDAAGTAGAETVKGVFLGLLGRCQVS
ARAAFRVANRVLGCVGSGGEGSSLRTKVVADLVSDERVVALFASEATAKERAAMHAVLWNRASEHFRSKDYETSAVMFEKSLLYISHDIENRILRAKGFR
VLCLCYLGLSQFDRAQEYINEAEKLEPNIACAFLKFKIYLQNNDHNGAINQVQAMKTCFDFTPDFLSLSAHEAVACHALPVAISSLSNLLSFYTLGRSMP
TTEVVVLRTLITILIQDPGNEVEVLKFMKRVHDRASELGTECFFGKEETGRREKNWFAVTSWNTGTKCGKEKKYELCAEFLRLVSGFYGLVDCQEEEHSI
MVCKSLILSVSAMVASENQKKTALTDSEVKQAVELLDRAGKILTSISAGTQLGGDKITTVEPDLFFVHTFNAYDIYGRLGNFGPQQQLHFVKSFATSKAC
DPKYLLQIGLSTSQGPRSNPEVASFALNECLSALLSSPSPDYPDVALVVRRLIALASIHKGDSDDNAVQNLYKQAYRIMVGLKEGEYPTEEGKWLAMTAW
NRAAVPVRLGQVDAAPRWMDAGLELAREVSGMETYRACMEDFATAFNKKSHSHSNG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48390 ATZIP4 Tetratricopeptide repeat (TPR)... Potri.014G175350
[exp]
0 1
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Potri.014G070100
[exp]
2.64 0.8795
AT5G58320 Kinase interacting (KIP1-like)... Potri.019G061600
[exp]
5.83 0.8438
AT2G02480 STI STICHEL, AAA-type ATPase famil... Potri.004G230300
[exp]
10.48 0.8415 Pt-STI.4
AT1G27880 DEAD/DEAH box RNA helicase fam... Potri.010G056500
[exp]
11.13 0.8719
AT2G46920 POL poltergeist, Protein phosphata... Potri.002G185000
[exp]
12.00 0.7656 POL.2
AT3G09070 Protein of unknown function (D... Potri.016G111400
[exp]
12.84 0.8167
AT5G66750 CHR01, CHA1, SO... SOMNIFEROUS 1, DECREASED DNA M... Potri.019G129900
[exp]
14.07 0.8733 Pt-SOM1.1,CHR905
AT5G49110 unknown protein Potri.010G011800
[exp]
16.97 0.8333
AT3G63130 ATRANGAP1, RANG... RAN GTPASE-ACTIVATING PROTEIN ... Potri.005G209600
[exp]
17.23 0.8727 Pt-RANGAP1.1
AT5G62410 TTN3, ATSMC4, A... TITAN 3, structural maintenanc... Potri.003G108400
[exp]
18.73 0.8593 CPE902,Pt-SMC2.2

Potri.014G175350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.