Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSAL.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12800 300 / 3e-104 PSAL photosystem I subunit l (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239700 [exp] 324 / 5e-114 AT4G12800 289 / 6e-100 photosystem I subunit l (.1) Potri.015G041900 [exp] 51 / 2e-07 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002143 [exp] 310 / 2e-108 AT4G12800 300 / 4e-104 photosystem I subunit l (.1) Lus10008747 [exp] 300 / 4e-100 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02605 [poplar] [flax] PsaL Photosystem I reaction centre subunit XI
Representative CDS sequence Show only first row Show all	>Potri.014G175600.2 pacid=42763834 polypeptide=Potri.014G175600.2.p locus=Potri.014G175600 ID=Potri.014G175600.2.v4.1 annot-version=v4.1 ATGGCCACTACTGCTTCTCCAATGGCCAGCCAGCTCAAAAGCAGCCTTGCCTCATCTCTAGGAAGGAGGCTTGTCATCCCCAGAGGCATTTCTGGAGCTC CATTTAGAGTTTCGCCCAACAAGAGAAGCTTCACTGTCAAAGCCGTTCAAGCAGACAAGCCAACTTACCAAGTGGTTCAACCAATCAATGGCGATCCCTT CATTGGAAGTCTTGAGACTCCCGTTACATCAAGCCCGCTGATTGCATGGTACCTGTCCAACCTCCCCGCCTACAGGACAGCAGTCAGTCCACTTCTCCGC GGAATCGAGGTGGGGCTGGCCCATGGCTTCCTCCTCGTAGGTCCATTTGTCAAGGCTGGTCCACTGAGGAACACAGAGTATGCAGGTGCTGCTGGATCTT TGGCTGCAGGTGGTCTGATCGTAATCCTAAGCATTTGCTTGACCATGTATGGAGCTGCATCCTTCACTGAAGGAGAGCCATCAATTGCCCCAAGTCTAAC CTTGACTGGAAGGAAGAAGGTGCCTGACCAGTTGCAAACTGCAGATGGCTGGGCCAAGTTCACTGGAGGATTCTTCTTTGGTGGGATTTCTGGTGTCACC TGGGCATTTTTCCTTCTCTATGTCATAAACCTTCCTTACTATGTTAAGTAG
AA sequence Show only first row Show all	>Potri.014G175600.2 pacid=42763834 polypeptide=Potri.014G175600.2.p locus=Potri.014G175600 ID=Potri.014G175600.2.v4.1 annot-version=v4.1 MATTASPMASQLKSSLASSLGRRLVIPRGISGAPFRVSPNKRSFTVKAVQADKPTYQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLR GIEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAGGLIVILSICLTMYGAASFTEGEPSIAPSLTLTGRKKVPDQLQTADGWAKFTGGFFFGGISGVT WAFFLLYVINLPYYVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	0	1	PSAL.2
AT4G01150			unknown protein		Potri.014G093900 [exp]	1.41	0.9892	CAM2.1
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Potri.002G253800 [exp]	2.00	0.9886	PSAE1.1
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.002G047100 [exp]	3.00	0.9818
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.005G010266 [exp]	3.74	0.9792
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	4.47	0.9851	Lhca6,Pt-LHCA2*1.1
					Potri.004G068600 [exp]	4.58	0.9826
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Potri.016G072100 [exp]	4.89	0.9846	Pt-BAS1.2,PtrcPrx2-cysA
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.004G014850 [exp]	4.89	0.9859
AT1G32470			Single hybrid motif superfamil...		Potri.001G144800 [exp]	6.24	0.9797	gdcH4,GDCH.2
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	6.92	0.9783

Compare expression of checked genes

Potri.014G175600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.