Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12830 545 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 151 / 6e-43 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 62 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 61 / 5e-10 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 52 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 50 / 1e-06 ATSEH soluble epoxide hydrolase (.1) AT4G36530 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G02340 49 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G54990 49 / 5e-06 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 48 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201500 [exp] 154 / 4e-43 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 65 / 3e-11 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 62 / 1e-10 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G039700 [exp] 56 / 1e-08 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G027300 [exp] 53 / 2e-07 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G121000 [exp] 51 / 7e-07 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G202700 [exp] 50 / 1e-06 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 48 / 6e-06 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G021500 [exp] 48 / 7e-06 AT1G54990 467 / 6e-162 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002142 [exp] 562 / 0 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10008747 [exp] 372 / 3e-125 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Lus10035875 [exp] 167 / 6e-48 AT1G52510 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025787 [exp] 166 / 2e-47 AT1G52510 543 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 62 / 3e-10 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10028315 [exp] 57 / 1e-08 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 54 / 8e-08 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 54 / 1e-07 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028340 [exp] 53 / 1e-07 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 52 / 2e-07 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.014G175700.2 pacid=42764629 polypeptide=Potri.014G175700.2.p locus=Potri.014G175700 ID=Potri.014G175700.2.v4.1 annot-version=v4.1 ATGGCAATTCTTCAACCACAAATCCCTTTGTCTCTTTACCCCCATCATTTCCATCTCCCTCTTCACTCTCCTACTGCAGCACCTTTTCTTTGCACACCCT TCAAAACACCAAGAAAACCACTCAATCTCACCTGCTCATCCAAAGGCCAAGATGATTATCTGATAGATGCTCCTGTTTCTGCTGGAGATGGGTTTTCTTT CTCTGGAGGGAAATATTCAGACGGGCCTAGCCCGTCCGATGAATGGTTTAAGCAAGGAAAGATTGTGAAAGCTCATCCTGTTTCTGGCTCTGGAGATAAG GCGAAAGATCCTATATTTGGACTTAAAATGGGTGCTGCTTCTCAGGCCTCAAATGATCTTTTCAGATGGTTTTGCGTGGAAAGCGGAAATGCTGATAATC CTACTGTTATCTTAATTCATGGTTTCCCTTCACAGGCATATTCATACCGCAAAGTTCTTCCCACTCTGTCCAAAAACTATCATGCTATTGCTTTTGATTG GTTAGGATTTGGATTTTCAGACAAGCCTCAACCCAGATACGGATTTGACTACACTATGGATGAATTTGTAGCATCCTTGGAGTCCTTAATCAATGAAATT GCCACTGAGAAGGTATCGCTTGTTGTGCAGGGATACTTTTCACCAATTGCTGTCAAATATGCTAGCAATCTTCAGGGAAAGCTCAATGATCTAATACTCC TCAATCCCCCACTAACTGCCACACATGCCAATCTTCCATCAGCCTTGTCCATTTTCAGCACCTTCTTACTGGGTGAAATCTTTTGCCAGGATCCTTTAAG GGCCAGTGACAAAACCTTGACCAGCTCTGGACCCTATAAAATGAAAGAAGATGATGCAATGGTATATAGAAGACCTTATCTCACATCTGGGTCTGCAGGG TTTGCATTGAACGTGATTAGTAAGGCCATGAAGAAGGATCTAAAGGCCTATGTGGAAGAAACAAGGAAAACACTCTTGGATGAAAATTGGAAAGTTAGAA CCACAGTGTGTTGGGGCCAGAGAGATCGTTGGTTGAGCTATGATGGAGTTGAAGACTTCTTGAAGAATTCCAAACATAAACTAATCGAGCTTCCAATGGC TGGTCATCATGTACAGGAGGATTGTGGTGAAGAACTTGGAGGAATCATCTCTGGAATCCTAGGCAGAAGGAGCAGAATTTGA
AA sequence Show only first row Show all	>Potri.014G175700.2 pacid=42764629 polypeptide=Potri.014G175700.2.p locus=Potri.014G175700 ID=Potri.014G175700.2.v4.1 annot-version=v4.1 MAILQPQIPLSLYPHHFHLPLHSPTAAPFLCTPFKTPRKPLNLTCSSKGQDDYLIDAPVSAGDGFSFSGGKYSDGPSPSDEWFKQGKIVKAHPVSGSGDK AKDPIFGLKMGAASQASNDLFRWFCVESGNADNPTVILIHGFPSQAYSYRKVLPTLSKNYHAIAFDWLGFGFSDKPQPRYGFDYTMDEFVASLESLINEI ATEKVSLVVQGYFSPIAVKYASNLQGKLNDLILLNPPLTATHANLPSALSIFSTFLLGEIFCQDPLRASDKTLTSSGPYKMKEDDAMVYRRPYLTSGSAG FALNVISKAMKKDLKAYVEETRKTLLDENWKVRTTVCWGQRDRWLSYDGVEDFLKNSKHKLIELPMAGHHVQEDCGEELGGIISGILGRRSRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	0	1
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	1.00	0.9905
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Potri.016G096600 [exp]	2.00	0.9826
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	2.44	0.9768
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	3.46	0.9787	FBP.1
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	4.47	0.9773	Pt-PPH1.1
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	5.65	0.9661
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.002G000200 [exp]	5.74	0.9630
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	9.16	0.9730
AT1G76570			Chlorophyll A-B binding family...		Potri.005G258600 [exp]	9.48	0.9649
AT1G78915			Tetratricopeptide repeat (TPR)...		Potri.008G003800 [exp]	11.53	0.9586

Compare expression of checked genes

Potri.014G175700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.