Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59500 379 / 4e-134 Integral membrane HRF1 family protein (.1) AT1G30890 363 / 3e-128 Integral membrane HRF1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129900 [exp] 364 / 2e-128 AT1G30890 380 / 2e-134 Integral membrane HRF1 family protein (.1.2) Potri.017G028425 [exp] 357 / 1e-125 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.017G028500 [exp] 357 / 1e-125 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.001G327700 [exp] 45 / 4e-06 AT1G30890 53 / 2e-09 Integral membrane HRF1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008752 [exp] 390 / 7e-139 AT3G59500 392 / 4e-139 Integral membrane HRF1 family protein (.1) Lus10027039 [exp] 366 / 4e-129 AT1G30890 469 / 2e-169 Integral membrane HRF1 family protein (.1.2) Lus10025577 [exp] 363 / 6e-128 AT1G30890 466 / 2e-168 Integral membrane HRF1 family protein (.1.2) Lus10007418 [exp] 268 / 4e-91 AT1G30890 345 / 2e-121 Integral membrane HRF1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF03878 [poplar] [flax] YIF1 YIF1
Representative CDS sequence Show only first row Show all	>Potri.014G175900.3 pacid=42764611 polypeptide=Potri.014G175900.3.p locus=Potri.014G175900 ID=Potri.014G175900.3.v4.1 annot-version=v4.1 ATGAATCCCAAATCCAATCCATTTTCTGCAGCTGGTTCAGGGCTCATTCGAGGGGGATTGGGTGCTTATGGAGAGAAAATTTTTGGGTCAGGCTCTGAGT ATGTACAAAGCAATATAAGCAAGTGCTTCTCTTACCCTCAATATTACTTCCAAGTGAATGACCATTATGTCAGGAATAAATTGAAGATTGTTCTTCTTCC TTTTCTAAACAGGGGCCACTGGACAAGAATAACTGAGCCAGTTGGAGGCAGGCTTTCCTATAAACCTCCAATTAATGACATAAATGCTCCAGATTTATAC ATTCCTTGCATGGCATTTGCTACCTACTTGGTTCTTTCTGGCATCTCATTGGGCCTTTCTGGGAAGTTTACACCAGAGGCCTTAAATTGGCAGTTTGTTA AAGGAATGATAGGCTGGTTTTCCGAAGTGATGCTGCTGAAAGTTTCAATTCTTTCACTGGGAGGTGGGGAGGCACCTCTGTTGGACATGGTAGCATATGC TGGGTATACATTCACAGGGATGTGTGTTGCTGTGCTGGGGAGGATCACTTTGGGCTATACATACTATCTGATAATTTTGTGGACATGTCTTTGCATGGGT ATATTTTTGATCAAGACTATGAAGCGAACTCTATTGTCTGAGGTTAGGAGTTATGACTCAAGCAAGCATCAGTACCTCTTGCTCTGCACTGCTTTGACCC AGTTCCCATTGATGTTTTGCCTCAGCAACACTTCAGGAACTTAG
AA sequence Show only first row Show all	>Potri.014G175900.3 pacid=42764611 polypeptide=Potri.014G175900.3.p locus=Potri.014G175900 ID=Potri.014G175900.3.v4.1 annot-version=v4.1 MNPKSNPFSAAGSGLIRGGLGAYGEKIFGSGSEYVQSNISKCFSYPQYYFQVNDHYVRNKLKIVLLPFLNRGHWTRITEPVGGRLSYKPPINDINAPDLY IPCMAFATYLVLSGISLGLSGKFTPEALNWQFVKGMIGWFSEVMLLKVSILSLGGGEAPLLDMVAYAGYTFTGMCVAVLGRITLGYTYYLIILWTCLCMG IFLIKTMKRTLLSEVRSYDSSKHQYLLLCTALTQFPLMFCLSNTSGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	0	1
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.012G118100 [exp]	1.41	0.9125
AT1G76070			unknown protein		Potri.005G245600 [exp]	4.00	0.8802
AT3G56750			unknown protein		Potri.006G040400 [exp]	5.47	0.9009
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	5.47	0.8797
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	5.91	0.8767	Pt-RAB11.12
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	6.24	0.8898
AT2G42005			Transmembrane amino acid trans...		Potri.004G206800 [exp]	6.92	0.8364
AT1G50710			unknown protein		Potri.011G090800 [exp]	7.34	0.8098
AT2G40435			unknown protein		Potri.006G106900 [exp]	12.64	0.8448
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	14.42	0.8698

Compare expression of checked genes

Potri.014G175900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.