Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19260 192 / 1e-55 TTF-type zinc finger protein with HAT dimerisation domain (.1) AT3G29765 185 / 2e-54 General transcription factor 2-related zinc finger protein (.1) AT4G09660 157 / 2e-43 unknown protein AT1G41920 113 / 5e-28 General transcription factor 2-related zinc finger protein (.1) AT2G06541 113 / 8e-28 TTF-type zinc finger protein with HAT dimerisation domain (.1.2) AT3G29763 107 / 5e-26 General transcription factor 2-related zinc finger protein (.1) AT3G29450 78 / 8e-16 General transcription factor 2-related zinc finger protein (.1) AT3G31402 69 / 3e-13 General transcription factor 2-related zinc finger protein (.1.2) AT2G19960 52 / 4e-08 hAT family dimerisation domain (.1) AT4G10200 44 / 0.0001 TTF-type zinc finger protein with HAT dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.014G176150.1 pacid=42762727 polypeptide=Potri.014G176150.1.p locus=Potri.014G176150 ID=Potri.014G176150.1.v4.1 annot-version=v4.1 ATGGTTCAAGAAGGATCTTCTAATTCTATACGTGGAGAAGCTGGTGGTTGTTTGATTGTGATGAAATCTTTTAAATTTATATTCATTTTATATTTGATGC ATAAAATAATAGGGATTACTTATTTACTTTGTCGAGCTTTGCAGCAAAAATCTCTTGACATCTTAAATGCAATGGATCTTGTATCAACTACTAAAGCATT GCTTCAAACTTTGAGAGATGCCGGATTTGATCTTCTCCTTGCAAATGTGCAATTTGTTTGCACAAAATATGAGATTGACATACCACATATAAATGCTTCG TATAAAAAGGCTACAGGTCGTTCATGTCAACAACAAGGTTCAGTGACAGTTTACCAGCATTATCATTATGATATATTTAACTCAATAATAGATTTTCAGT TAGAAGAATTAAATTCTAGATTCAGTGATGGGATAGTGGAACTCCTTATACTTAGCTCTGCTTTAGAACCTAAGGACAACTTTAAATCATTTAAAGTTGA TGCTATTTACAAGCTTGCTGAGAAATTTTATCCTGAAGATTTCAATGAACAAGAGATGTATTATTTGAGATCTCAGCTAAAGCGTTATCAGATTGATGTG ATTCATCATGAGAGCTTTCAGAATATGTCTACCATTTCTGAATTATGTCGAGGATTAGCCGAAACAAATAAGTCGCAGTACTATCATTTGATTGACAGGT TGATTCGTTTTGTTTTGACTTTGCCTGTTTCCACTGTCACTACAGAGCGGATATTTTCAGCTATGAAACATGTTAAAACTGTGCTTCGCAATAAAATGAA AGAGGAGTTCTTAGCAGATTCTATAATGATTTACATTGAACGAGAGCTTGTTGAAGATATTGATTCGGATTCGATCATAGATGAATTCTATTCTACAAAA CATCGAAGGGTGCAGCTTTAA
AA sequence Show only first row Show all	>Potri.014G176150.1 pacid=42762727 polypeptide=Potri.014G176150.1.p locus=Potri.014G176150 ID=Potri.014G176150.1.v4.1 annot-version=v4.1 MVQEGSSNSIRGEAGGCLIVMKSFKFIFILYLMHKIIGITYLLCRALQQKSLDILNAMDLVSTTKALLQTLRDAGFDLLLANVQFVCTKYEIDIPHINAS YKKATGRSCQQQGSVTVYQHYHYDIFNSIIDFQLEELNSRFSDGIVELLILSSALEPKDNFKSFKVDAIYKLAEKFYPEDFNEQEMYYLRSQLKRYQIDV IHHESFQNMSTISELCRGLAETNKSQYYHLIDRLIRFVLTLPVSTVTTERIFSAMKHVKTVLRNKMKEEFLADSIMIYIERELVEDIDSDSIIDEFYSTK HRRVQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	1.41	0.9807
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.017G086200 [exp]	2.82	0.9500	NAC028
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	4.24	0.9592	AG1.1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	4.47	0.9543
AT5G36930			Disease resistance protein (TI...		Potri.013G097050 [exp]	5.29	0.9514
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G026325 [exp]	5.47	0.9520
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	5.65	0.9549
AT4G03230			S-locus lectin protein kinase ...		Potri.001G441040 [exp]	7.14	0.9372
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	8.12	0.9436
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	11.48	0.9340	RD21.1

Compare expression of checked genes

Potri.014G176150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.