Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22400 786 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 752 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT1G72520 611 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 610 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 568 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 562 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018200 [exp] 1646 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032400 [exp] 789 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 787 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 784 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 770 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 766 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.013G022100 [exp] 763 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 759 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 754 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025857 [exp] 1148 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10004915 [exp] 781 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10015184 [exp] 771 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 753 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10001465 [exp] 719 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 654 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10015666 [exp] 640 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 625 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 624 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 587 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.014G177200.1 pacid=42762521 polypeptide=Potri.014G177200.1.p locus=Potri.014G177200 ID=Potri.014G177200.1.v4.1 annot-version=v4.1 ATGGTGTTCCCCAGAGCATATCCCAGCATGCAAGAGCGAGTGAGAGAAGTCCAAAGCAAATTTCAAAATCATCATATCAAGCAAAACATTATAAAGGGAA AAATTGTTATTCAAAATCATGGGCAATCAGGACCAGGAAAATCAGCATCTGTACAGATTTATAGCAGCACTACAGTCGATCCAAGCACAGGCAAAGGAAA GTTGAGTGCAAAAGCCTACCTCAAGCGTGGAAAGAGCGAGGGACATGATGGCACAAAAACAAGAATATACAAAATAAAAATACATGTCGAGCCGGACTTT GGGATTCCAGGAGCTTTTCTTATGAAAAATCAACATAAGCATAAGTTCTTCCTTGAATCTGTAACTCTAGAAATTCCAGACAATCAGATCATCTACTTTG ACTGCAGATCTTGGGTATATCCATTCCAAAAGACAAAATCAGAGCGCCTATTCTTCTCAAACAATAGTTATCTTCCAAATCATACACCTAGCGCTCTGGT GGAGTTGAGAAAGCTGGAACTTGTTAGTCTGAGAGGGGATGGAAAACAAGTGAGGAAGGAATGGGATCGAATCTATGACTATGATTATTACAACGATCTT TGTAATCCAGATAAAGGTCAGGAACACATTAGACCAGTCTTGGGTGGTTCTGAATTACATCCATACCCCCGTAGGGTGAGAACAGGTCACCCTCCCAGCA ATACAGAACCTTCAACCGAGAGCCGGACAGAAACAATCAACTTGGATATATATGTTCCTCCAGATGAGCGTTTTAGTCCCAAGAAACTATCAGAGTTCAT ATCAAATTCAATCCAGGCTACTGTGCATTTCATTATCACAGAGGCAGATTCATTATTCAAACAAGATTCCAGTAGTTTTGAGTCGTTTGACGAGATACAT GATATGTTTTCTAGCAAGAGAAGTAAAGCAGTAGAGGGAAAGGCCAAAGACAAATTGAAGGGAAAGGTCAAAGAAAGATTGAAGAAATTAGTTCCAGATG TCCTTTTCAAAGAAATTACTTATGCAGGCAAAGAAGACCTCGCGAAATTCCCATTACCTCAAATTATAAGAGAGAATGAATTAGCCTGGGGAAACGATGA GGAATTTGGACGTCAAATGCTTGCAGGAACTAATCCAGCAAGGATACAAAGTTTGCAGAAATTCCCACCAGAAGGCAGATATGGAATGAGTACAATAGAG GCATCACACATAGAGCACAGCCTTGATGGGTTGACACTTTTCGAGGCAATGAATGAATGGAGGATATTCATCTTGGATCACCATGACTATCTCATGCCGT ATTTAAGCAAAATTAACACAAATGGTGTTTGTGCTTATGCATCAAGAACACTATTTTTCTTAAGAACTGATGATACATTAAAGCCATTAGCAATAGAATT GAGCCTGCCTGGCTCCAGTGAGGACACAGAAGTCAGCAGGGTGTTTCTCCCAGCAAATCAAGGAACTGAAGCAGCACTATGGCAGCTTGCTAAAGCTCAT GTTGCAGCTAATGACTCAGCATACCACCAACTAATTAGCCATTGGTTACACACTCATGCAGTAGTTGAGCCGTTCATTATTGCAACTAGAAGGCAGTTGA GTGTCATGCACCCAATCAACTGGCTACTACGTCCTCATTTCAAGGACACCATACACATAAACGCATTGGCACGGAGTATCCTCATAAACTCTAGAGGAAT CCTTGAGAAAACACTCTTTTCTGGTGAAATATCCATGGAATTGTCTTCTGAACTCTATAAAGAATGGAGATTTGATGAACAAGCTCTTCCTGCTGATCTT GTCAAAAGAGGATTGGCCCTGGAAGACCCAGACAATCCAAATAATCCCACTGAGGTACAGCTCCTCTTCGATGATTATCCCTATGGTGCAGATGGACTTG ATATTTGGCATGCCATCAAGACATGGGTCACAGACTTCTGCTCACTTTTCTACGAAAACGATTCTTCTGTCAATTCTGATGTAGAAATTCAAGCATGGTG GTCTGAGATCCAGAATGTGGGCCATGGTGATAAGTGCAACGAGACATGGTGGTACAAAATGACAACTCTCTTAGACCTAACAGAGGCTCTAACAACACTA ATATGGATTACATCAGGCCTTCACGCTTCCGTCAACTTTGGGCAATATGCATATGCTGGCTGCCCTTTAAATCGTCCCATGCTATGTCGAAATTTTATTC CAGAGCAAGGGACACAAGAATTTGCCGAGTTCTTAAGAGATCCAGACAAATATTATCTTAACATGCTGCCCAGCAGATTTGAGATGAGCCTCGGTATAGC ATTAATTGAGGTTCTCTCGAGGCACACATCTGATGAAGTATACTTAGGTCAGAGGCCGCTGTTAGAGTGCACTGACGATGGAGTTCAGGAAAAATTCAAG AAGTTCAACGAACATCTCCAAGAGATAGAGAAGAAAATTATTCAGAGGAACAAAGATCCTAAGTTTAAGAACAGGAGCGGCCCTGCCAAGATCCCATATG AACTTCTCTACCCAGATACATCCAATGTTGGATCCACATGGGGCATCACAGGAAAGGGGATCCCTAACAACATATCAATATAG
AA sequence Show only first row Show all	>Potri.014G177200.1 pacid=42762521 polypeptide=Potri.014G177200.1.p locus=Potri.014G177200 ID=Potri.014G177200.1.v4.1 annot-version=v4.1 MVFPRAYPSMQERVREVQSKFQNHHIKQNIIKGKIVIQNHGQSGPGKSASVQIYSSTTVDPSTGKGKLSAKAYLKRGKSEGHDGTKTRIYKIKIHVEPDF GIPGAFLMKNQHKHKFFLESVTLEIPDNQIIYFDCRSWVYPFQKTKSERLFFSNNSYLPNHTPSALVELRKLELVSLRGDGKQVRKEWDRIYDYDYYNDL CNPDKGQEHIRPVLGGSELHPYPRRVRTGHPPSNTEPSTESRTETINLDIYVPPDERFSPKKLSEFISNSIQATVHFIITEADSLFKQDSSSFESFDEIH DMFSSKRSKAVEGKAKDKLKGKVKERLKKLVPDVLFKEITYAGKEDLAKFPLPQIIRENELAWGNDEEFGRQMLAGTNPARIQSLQKFPPEGRYGMSTIE ASHIEHSLDGLTLFEAMNEWRIFILDHHDYLMPYLSKINTNGVCAYASRTLFFLRTDDTLKPLAIELSLPGSSEDTEVSRVFLPANQGTEAALWQLAKAH VAANDSAYHQLISHWLHTHAVVEPFIIATRRQLSVMHPINWLLRPHFKDTIHINALARSILINSRGILEKTLFSGEISMELSSELYKEWRFDEQALPADL VKRGLALEDPDNPNNPTEVQLLFDDYPYGADGLDIWHAIKTWVTDFCSLFYENDSSVNSDVEIQAWWSEIQNVGHGDKCNETWWYKMTTLLDLTEALTTL IWITSGLHASVNFGQYAYAGCPLNRPMLCRNFIPEQGTQEFAEFLRDPDKYYLNMLPSRFEMSLGIALIEVLSRHTSDEVYLGQRPLLECTDDGVQEKFK KFNEHLQEIEKKIIQRNKDPKFKNRSGPAKIPYELLYPDTSNVGSTWGITGKGIPNNISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	0	1
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	2.64	0.9706
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	3.46	0.9656
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.006G205300 [exp]	4.58	0.9388
AT5G45480			Protein of unknown function (D...		Potri.006G013500 [exp]	5.83	0.9423
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	6.24	0.9648
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.005G112200 [exp]	6.92	0.9615
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	9.79	0.9549
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	10.39	0.9515
AT4G19090			Protein of unknown function (D...		Potri.012G018500 [exp]	10.95	0.9523
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	12.40	0.9472

Compare expression of checked genes

Potri.014G177200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.