Plant FIBer expression Database

Potri.014G177300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48440 512 / 1e-179 FAD-dependent oxidoreductase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G018300
[exp]
906 / 0 AT5G48440 531 / 0.0 FAD-dependent oxidoreductase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025858
[exp]
553 / 0 AT5G48440 506 / 3e-177 FAD-dependent oxidoreductase family protein (.1.2)
Lus10038241
[exp]
552 / 0 AT5G48440 504 / 9e-177 FAD-dependent oxidoreductase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01266 DAO FAD dependent oxidoreductase
Representative CDS sequence
>Potri.014G177300.4 pacid=42762299 polypeptide=Potri.014G177300.4.p locus=Potri.014G177300 ID=Potri.014G177300.4.v4.1 annot-version=v4.1
ATGGCTTCCGTTACGCTACACATACAGTCACCACCACTCAACAACGACGTCGTTTCGCTTCCAAGGAATCATTTCCCTATCGTCACCTTCAAAACAACCT
TTTTTGGCTCCTCGTTGACCGCGAACGGGAAACCGCTTTCTCTACCAAAAACCTTTCGAACTCAACCCGTAATCACTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTACTCACACGTTTGATGTTGTAATTATTGGTGCTGGAATCATCTGGTTAACTATTGCCCGGCAGTTCCTCATCGGGTCGGACCTTTCCGTTGCT
GTTGTTGATAAGGACGTCCCTTGCTCTGGTGCTACTGGCGCTGGGCAGGGATACTTGTGGATGGTGCACCAGGAACCAGAGAGTGACACATGGGACCTCA
CAATGAGAAGCTATAAACTGTGGCAAATGTTTGCAGAGAAGGTGCGTGCCCAAGGCCTGGATCCGTTACAAGAATTAGGTTGGAAACGGACTGGAAGTTT
GTTGGTAGGCAGAACTGCCAAAGAGGCAGCAACGTTGAAAAAGAAAGTGAAGAGATTATCTGAAGCTGGATTGAGAGCAAAGTACTTAACAAGTGATGCT
TTGCGATTAAAGGAACCTGAGCTTGAGGTCGGTAAAGATGGTGGGGCTGCGTTTCTACCCGATGATTGTCAATTGGACGCTCAACGTGCTGTTGCATTCA
TTCAAAAGGCTAATAGGCATTTTTCTATAAAAGGGAGATATGCGGAGTTCTTTCATGATCCTGTGACAGGTTTATTGAGATCTGATAGCAGCAGTGAGGT
TGAAGGTGTTCGGACTTTCAAGAATACATTGTACAGTAAGAAGGCTGTTATAGTGGCAGCTGGTTGTTGGAGCGGGTCTTTGGCACATGACTTGTTTAGA
GAATCAGATATTTTGTTGAATGTCCCTGTTAAGCCTCGGAAGGGTCACTTGGTTGTCCTTGAGAACTTTAGTTCCTTTAGATTGGACCATGGCCTGATGG
AGATGGGTTATGTTGATCATCTACATGATGCTTTAGATCGCAAAAGTTCACATTCAGTAAAAGTTGAGGAAGGGCAAACCCCGTCTGTCTCGATGACGGC
CACGATGGACACAATGGGAAACCTTGTTCTTGGGAGCAGCCGTCAGTTTACTGGGTATAGCACTAAAGTGGATGAGTCCATTATTAATCATATATGGAAG
AGGGCTGGAGAGTTCTTTCCCAAACTAAAAGAGCTGCCCCTTGAAGATTTCACTTTGGATAGAAAAGTGAGAATAGGATTACGCCCTTATATGCCTGATG
GGAAGCCAGTGATTGGGCCTGTGCCTGGTTTGATGAATGTGATCATCGCAACTGGGCATGAAGGAGGAGGACTTTCTATGGTAATATCTGTATCCCTCTT
TTCCACTGAAGAAAAGTGGTTAGGTGTTTTTCCTTTCTTATTCTTTTTTTCCCCTTCTAAAAATAAATTCAGGCTTTTAAGTTTGACCATATTGTTCTAG
AA sequence
>Potri.014G177300.4 pacid=42762299 polypeptide=Potri.014G177300.4.p locus=Potri.014G177300 ID=Potri.014G177300.4.v4.1 annot-version=v4.1
MASVTLHIQSPPLNNDVVSLPRNHFPIVTFKTTFFGSSLTANGKPLSLPKTFRTQPVITSSSSSSSSSSTHTFDVVIIGAGIIWLTIARQFLIGSDLSVA
VVDKDVPCSGATGAGQGYLWMVHQEPESDTWDLTMRSYKLWQMFAEKVRAQGLDPLQELGWKRTGSLLVGRTAKEAATLKKKVKRLSEAGLRAKYLTSDA
LRLKEPELEVGKDGGAAFLPDDCQLDAQRAVAFIQKANRHFSIKGRYAEFFHDPVTGLLRSDSSSEVEGVRTFKNTLYSKKAVIVAAGCWSGSLAHDLFR
ESDILLNVPVKPRKGHLVVLENFSSFRLDHGLMEMGYVDHLHDALDRKSSHSVKVEEGQTPSVSMTATMDTMGNLVLGSSRQFTGYSTKVDESIINHIWK
RAGEFFPKLKELPLEDFTLDRKVRIGLRPYMPDGKPVIGPVPGLMNVIIATGHEGGGLSMVISVSLFSTEEKWLGVFPFLFFFSPSKNKFRLLSLTILF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48440 FAD-dependent oxidoreductase f... Potri.014G177300
[exp]
0 1
AT5G36930 Disease resistance protein (TI... Potri.005G206400
[exp]
4.47 0.7867
AT4G28880 CKL3 casein kinase I-like 3 (.1) Potri.018G041000
[exp]
5.38 0.8157
Potri.004G011375
[exp]
6.00 0.8094
Potri.019G024466
[exp]
7.48 0.7889
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Potri.010G077900
[exp]
10.81 0.7913
AT5G48440 FAD-dependent oxidoreductase f... Potri.014G018300
[exp]
11.22 0.6778
AT5G54260 MRE11, ATMRE11 ARABIDOPSIS MEIOTIC RECOMBINAT... Potri.001G407300
[exp]
12.96 0.7819 Pt-MRE11.1
AT3G22520 unknown protein Potri.010G086700
[exp]
14.69 0.7762
AT4G00500 alpha/beta-Hydrolases superfam... Potri.014G083600
[exp]
16.00 0.7596
AT1G70570 anthranilate phosphoribosyltra... Potri.010G044900
[exp]
18.76 0.7697

Potri.014G177300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.