Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25430 667 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G55870 217 / 1e-61 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018500 [exp] 1195 / 0 AT3G25430 662 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G368401 [exp] 233 / 1e-67 AT1G55870 685 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009563 [exp] 662 / 0 AT3G25430 578 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10020388 [exp] 653 / 0 AT3G25430 565 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10033691 [exp] 202 / 2e-56 AT1G55870 713 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10031646 [exp] 170 / 4e-45 AT1G55870 637 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10002539 [exp] 107 / 2e-27 AT3G25430 87 / 9e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF04857 [poplar] [flax] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Potri.014G177400.1 pacid=42764684 polypeptide=Potri.014G177400.1.p locus=Potri.014G177400 ID=Potri.014G177400.1.v4.1 annot-version=v4.1 ATGGTTGCCGTCTCCCCGCTGCTGCAAAGGCGCCTGTTAAGCACCAGCGTGACTAGAACCCACCATAAACCTCAACAGCAATGGAGCGTAAAGCAAGTCA CAAAATCAAACTTCGCTGACACTCTTGAGGACATAAAATCCCATGTCTCCAATTCCGATTTTGTGGCCGTGTCCTTGCAAAACACCGGCTTCTTCTCCGC CCCTTGGCAACGCGTCTCCCCTTTTGACACCGCCGACACGGCTTACTTAAAAGCCAAGTATGCCGCTGAAAGGTTCCAGGTTCTTCATTTCGCTGTTTGC CCCTTCACTGTCAGGGCTTCTAAAGTCACTGCCTACCCATATAATTTTCACTTGTTCCCAAGAGCTGAACTAAAGATGGAAATGCCTTCTTACAGTTTTT ATTGTCAAACCTCGTCTTTGATATCTATGGCTCGCCAAGGTTTTGACTTTAATTCTTGCATAAATGATGGTATCTCATACTTGTCCAGAGAACAAGAATC TGCTGCAAAAATTCAGATGGGGAATCCAATACTTGCAAAGAATGTGACAGAATCCACTTCTACCCTTTCTGTTGCTGATTCTGTATTCGTTGAAAGGATT AAATCACACATTAAAAATTGGAAGAAAGCATGTAAAGAAACTAGCACAAGGAAAGAAGGCAACCAAATTCAAGATGCTCTGGTCAGATCCCTAAGAAAAC TCGTTCTAGGAAATGAAGAGTATGATTCAAGACCGTGCATGAATATAGATGTTTGCAGTGAACGCCAAGCGCAGCTTGTGGTTGAGATGTTGCAAGAATT TGCTGATGATGTTGTTCCTTTAATAATTCCAGCAAAGGGTGGAGCAATGCAGGCAGTTCGTGTTGTTTTAACAAGTTCAAAGGAGGATAAAGATCTTCTG CAGGGAAAGCTTCAAAATGACGAACAGGAACTAAAGAAAAAGGTCCGTGGCTTTCGAGAGGTGATCGATTTGATATCTGCTTCTCAGAAGCCTGTTGTCT CGCATGGTTCCCTTAATGATTTAACAGTTATTCATTCAAAATTCATAGCTCCCCTGCCTCCTACAGTGGATGAGTTTATGTGTTCCTTGCGTTTGGCTTT CCCCCTGGTAATTGATGTCAACCATCTGATGAAGGAGATCAGTCCTCTGAGAAAAGTTACTAGTATACCTGTAGCTATTTCTCAATTAAAGAATCGGTTC TTTACACCCATTGATATGGAAATTCCATGCCAAGCTATGGAAAATGAAGACACTATTCATGGGCAAAATGTTGTGAAGATTTGTGAATTGTTTGCTAGGC TATGCAGTATACTCAAAATCGATCCTGCTGCTGTCAAATCAGATGAAGAAAAAGGGGCTTCAGCCCTTGAAGCTTACGCAAATATTTTCAGTCCATTCTG TACTGCATCTGAAGAACCAATAGATGGAGAAATCAAAATATGGACTAACAACACAAGAACTGTGAGCTGTGAGGATATGGTTTTCTTGTGGGGATTTGGG GATAGGGTGACAGCTGGGATACTAAAGAGCCTGCTACAAGAGTCTCATGAAGCTTTCTCCAAGGAATTTGATGTGCGATTGGTAGATAATAGCTGCGCCA TTGTGATTTTCTGGCAACATGGGTTGACAGAAACTTTTCTGAATACCATGAATAAGTGCTCAGACATGCGCGGACCTTTGAGGGAGATGGTTTCAGAAGG TCTAAGAGCTGCAGGGTATGAGACTTACAATAGAGCTTGTAGGTTAGGTTTATGGGAGTCAAGTTTAGCAGATTCCTTAGACAGAGCCTTGGCTGACTCT GACTGTGCTTCCGAAGCTGATTCTAAAACGAAGTGTTCAGATAGGTGCAATGAGTGGATAATTAACCTGGATGATCTCTGA
AA sequence Show only first row Show all	>Potri.014G177400.1 pacid=42764684 polypeptide=Potri.014G177400.1.p locus=Potri.014G177400 ID=Potri.014G177400.1.v4.1 annot-version=v4.1 MVAVSPLLQRRLLSTSVTRTHHKPQQQWSVKQVTKSNFADTLEDIKSHVSNSDFVAVSLQNTGFFSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVC PFTVRASKVTAYPYNFHLFPRAELKMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESAAKIQMGNPILAKNVTESTSTLSVADSVFVERI KSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLL QGKLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISPLRKVTSIPVAISQLKNRF FTPIDMEIPCQAMENEDTIHGQNVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKIWTNNTRTVSCEDMVFLWGFG DRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALADS DCASEADSKTKCSDRCNEWIINLDDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	1.41	0.9167
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	2.00	0.9145
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	4.89	0.8953
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	7.93	0.8905
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	8.30	0.9017	Pt-TOC75.2
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	10.09	0.8912
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	10.39	0.8780
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	11.22	0.8721
AT3G42170			BED zinc finger ;hAT family di...		Potri.018G126750 [exp]	11.31	0.8475
AT1G53460			unknown protein		Potri.001G376900 [exp]	14.00	0.8777

Compare expression of checked genes

Potri.014G177400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.