Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 743 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 694 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT3G12203 354 / 3e-118 SCPL17 serine carboxypeptidase-like 17 (.1) AT5G09640 354 / 7e-118 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT1G73280 345 / 1e-114 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73300 342 / 3e-113 SCPL2 serine carboxypeptidase-like 2 (.1) AT3G10450 340 / 7e-113 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT2G22990 338 / 6e-112 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT2G23010 335 / 6e-111 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT5G36180 332 / 1e-109 SCPL1 serine carboxypeptidase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054300 [exp] 671 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.013G124900 [exp] 355 / 4e-118 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 342 / 3e-113 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 336 / 2e-110 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 334 / 1e-109 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 312 / 4e-102 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 312 / 5e-101 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 303 / 5e-98 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.005G091700 [exp] 280 / 1e-88 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025859 [exp] 802 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 794 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 723 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 710 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 637 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 630 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 611 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 576 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 376 / 2e-126 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 365 / 2e-112 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.014G177500.1 pacid=42763223 polypeptide=Potri.014G177500.1.p locus=Potri.014G177500 ID=Potri.014G177500.1.v4.1 annot-version=v4.1 ATGGCTAAGTCATGTCCTATCTTGTATAGGATCTTTTGTATGCTTTTAAGCTTTGTTTTACTCACTCACTCAGCCCCTGAAACTGCTCTTGTTACTCAGC TTCCTGGCTTCTCTGGCACTTTTCCTTCTAAACACTATTCTGGGTATGTGACCATAGATGAAAGTCAAGGGAAGAGATTGTTTTACTATTTTGTTGAATC GGAAAGGAACCCACCAAAGGATCCAGTTGTTCTTTGGCTCAATGGTGGACCTGGATGCTCTAGCTTTGATGGATTTGTATATGAACATGGTCCTTTCAAT TTTGAAGCAGCAGAAACAAAGGGAGATCTGCCCAAATTGCATCTTAATCCATACAGCTGGTCCAAGGTTTCCAGCGTTTTATATTTAGATTCTCCTGCTG GTGTTGGGCTTTCTTATTCCAAGAACGAAACTGATTATATAACTGGTGACACAAAGACTGCCTCTGATTCGCATGCCTTTCTACTCAAGTGGTTCGAGCT ATACCCAGAATTCCTCTCTAACCCATTTTTTATTTCTGGAGAGTCCTATGCTGGAATATATGTGCCAACTCTTGCTTATGAAGTCGTGAAAGGACTTGAT GCTGGTGTAAAGCCCATTCTCAATTTCAAGGGATATTTGGTGGGAAATGGAGTTACTGATGAGGAGTTTGATGGCAATGCTCTTGTTCCATTTGCACATG GGATGGGCCTGATCCCAGATGAGTTATTTGAGGAGGTAACCAAGGAGTGCACTGGAAATTTCTACAACCCACTCGGTGAAACTTGTGAGAGCAAACTCCA AAAAGTTTACAAGGACGTTGAAGGTTTAAACATATATGACATTCTAGAACCATGCTATCATGGCTCAAATATAAGGGAGGTTACAGATGATAGAATCAGG TTACCATCCAGCTTTCGGCAATTAGGTGAGACCGAAAGGCCTCTGCCTGTGAGAAAAAGGATGTTTGGCCGTGCCTGGCCTTTTAGAGCTCCTGTAAGAC CTGGAATTGTTCCAACATGGCCACAGCTCCTCGATGGCGAGAGTGTTCCATGCACTGATGATGAAGTTGCCACGTCATGGCTGAACAATGAAGCAGTTAG GAAAGCAATCCATGCTGAACTAGAAAGTGTATCTGGTACTTGGGAGTTGTGCACAGATAGAATCCGTTTTCATCATGATGCTGGTAGCATGATTAAGTAC CACAGGAACCTTACTTTGAGGGGATTTCGTGCCCTCATATTCAGCGGGGATCATGATATGTGTGTTCCATACACCGGGAGTGAAGCATGGACGAGATCAA TGGGATATGATATAGTTGATGAATGGAGGCCATGGACTTCCAATGGACAAGTTGCCGGTTATACACAAGGGTATGCAAACAACTTAACTTTCCTCACCAT GAAGGGGGCTGGACATACTGTCCCAGAATACAAACCACGAGAGGCATTAGATTTCTACAGTCGTTTTCTGTCTGGGAAACCGATCTAA
AA sequence Show only first row Show all	>Potri.014G177500.1 pacid=42763223 polypeptide=Potri.014G177500.1.p locus=Potri.014G177500 ID=Potri.014G177500.1.v4.1 annot-version=v4.1 MAKSCPILYRIFCMLLSFVLLTHSAPETALVTQLPGFSGTFPSKHYSGYVTIDESQGKRLFYYFVESERNPPKDPVVLWLNGGPGCSSFDGFVYEHGPFN FEAAETKGDLPKLHLNPYSWSKVSSVLYLDSPAGVGLSYSKNETDYITGDTKTASDSHAFLLKWFELYPEFLSNPFFISGESYAGIYVPTLAYEVVKGLD AGVKPILNFKGYLVGNGVTDEEFDGNALVPFAHGMGLIPDELFEEVTKECTGNFYNPLGETCESKLQKVYKDVEGLNIYDILEPCYHGSNIREVTDDRIR LPSSFRQLGETERPLPVRKRMFGRAWPFRAPVRPGIVPTWPQLLDGESVPCTDDEVATSWLNNEAVRKAIHAELESVSGTWELCTDRIRFHHDAGSMIKY HRNLTLRGFRALIFSGDHDMCVPYTGSEAWTRSMGYDIVDEWRPWTSNGQVAGYTQGYANNLTFLTMKGAGHTVPEYKPREALDFYSRFLSGKPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.014G177500 [exp]	0	1
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	9.48	0.7547
AT1G44760			Adenine nucleotide alpha hydro...		Potri.005G177100 [exp]	11.87	0.8095
AT2G28410			unknown protein		Potri.009G013800 [exp]	12.96	0.7565
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	19.67	0.7850	SMT1.2
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	30.98	0.7473
AT5G53045			unknown protein		Potri.012G017000 [exp]	32.49	0.7345
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.006G014900 [exp]	32.64	0.7376
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	37.94	0.7166
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.011G063300 [exp]	46.49	0.7288
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	63.24	0.7128

Compare expression of checked genes

Potri.014G177500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.