Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 192 / 4e-63 Protein of unknown function, DUF538 (.1) AT3G07460 182 / 8e-59 Protein of unknown function, DUF538 (.1.2) AT5G16380 149 / 7e-46 Protein of unknown function, DUF538 (.1) AT5G54530 120 / 6e-35 Protein of unknown function, DUF538 (.1) AT1G61667 120 / 8e-35 Protein of unknown function, DUF538 (.1) AT5G19860 102 / 2e-27 Protein of unknown function, DUF538 (.1) AT1G55265 94 / 3e-24 Protein of unknown function, DUF538 (.1) AT4G02360 71 / 1e-15 Protein of unknown function, DUF538 (.1) AT4G02370 66 / 8e-14 Protein of unknown function, DUF538 (.1) AT1G02813 64 / 4e-13 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238900 [exp] 327 / 2e-116 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 118 / 5e-34 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 118 / 5e-34 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 117 / 9e-34 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 115 / 5e-33 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 111 / 4e-31 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 101 / 2e-27 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 88 / 4e-22 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 85 / 4e-21 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029538 [exp] 214 / 2e-71 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 206 / 9e-68 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 203 / 3e-66 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 191 / 2e-62 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10019216 [exp] 191 / 3e-62 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 164 / 6e-52 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 154 / 4e-48 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 151 / 3e-46 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 127 / 1e-37 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 122 / 2e-35 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.014G177800.3 pacid=42763856 polypeptide=Potri.014G177800.3.p locus=Potri.014G177800 ID=Potri.014G177800.3.v4.1 annot-version=v4.1 ATGAAGAAAATGCTTCGTTTAATCTGTTTCCTCTCATTTCTCCTAATCTCAGTCCCAACCGTATGTTCTGATAAAAATCAATCGATTTACGATGTCTTGA AAGCCCACGGGCTGCCGATGGGGTTGTTACCGACGGGAGTGAAGGAATTCAACATCGACGAAACGGGGCGTTTCGAGGTACACCTCGATCAGGCTTGCAA TGCTAAATTTGAGAGTGAATTGCATTACGATATGAATGTTACGGGGAGTTTGAGTTTCGGGCAGATCGGGGCTTTATCGGGGATTTCGGCCCAGGAGTTG TTTTTGTGGTTTCCTGTTAAGGGAATTCGTGTTGACGTGCCGAGTTCTGGTCTTATTTATTTCGATGTTGGTGTTGTTTTTAAGCAGTTCTCGCTTTCCT TGTTTGAGATGCCTAGGGATTGTGTTGCTGTTCGTGATGAGGAAATTGAGGCTGTTCGGCATGGGAAGTTTATTGCTGATGCTGTCGCCAAGAGTCAATC TGGGAAGTTAAGATATGGGCTTGATCAGGAAAATTTTGGGAGGGATTTCCTGTAG
AA sequence Show only first row Show all	>Potri.014G177800.3 pacid=42763856 polypeptide=Potri.014G177800.3.p locus=Potri.014G177800 ID=Potri.014G177800.3.v4.1 annot-version=v4.1 MKKMLRLICFLSFLLISVPTVCSDKNQSIYDVLKAHGLPMGLLPTGVKEFNIDETGRFEVHLDQACNAKFESELHYDMNVTGSLSFGQIGALSGISAQEL FLWFPVKGIRVDVPSSGLIYFDVGVVFKQFSLSLFEMPRDCVAVRDEEIEAVRHGKFIADAVAKSQSGKLRYGLDQENFGRDFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07470			Protein of unknown function, D...		Potri.014G177800 [exp]	0	1
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.002G019500 [exp]	2.44	0.7212	Pt-ARAC4.1
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	6.00	0.7346
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	13.19	0.7092
AT1G74680			Exostosin family protein (.1)		Potri.002G210000 [exp]	18.97	0.6945
AT4G19400			Profilin family protein (.1)		Potri.003G106700 [exp]	20.49	0.6793
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G058501 [exp]	21.54	0.6903
					Potri.011G077440 [exp]	21.63	0.6869
AT4G33670			NAD(P)-linked oxidoreductase s...		Potri.009G081300 [exp]	21.81	0.6927
AT3G06600			unknown protein		Potri.008G103600 [exp]	22.91	0.6737
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	25.69	0.6817

Compare expression of checked genes

Potri.014G177800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.