Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25410 485 / 5e-171 Sodium Bile acid symporter family (.1) AT4G12030 188 / 2e-55 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT4G22840 178 / 2e-51 Sodium Bile acid symporter family (.1) AT2G26900 176 / 6e-51 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT1G78560 132 / 2e-34 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117300 [exp] 184 / 1e-53 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 174 / 6e-50 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 136 / 6e-36 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 136 / 1e-35 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038237 [exp] 543 / 0 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10025862 [exp] 542 / 0 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10006672 [exp] 175 / 4e-50 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10007016 [exp] 174 / 6e-50 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10008914 [exp] 165 / 4e-45 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 164 / 6e-45 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10005565 [exp] 135 / 3e-35 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 137 / 1e-34 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10036583 [exp] 132 / 2e-34 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10035803 [exp] 130 / 2e-33 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF01758 [poplar] [flax] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Potri.014G178000.2 pacid=42763992 polypeptide=Potri.014G178000.2.p locus=Potri.014G178000 ID=Potri.014G178000.2.v4.1 annot-version=v4.1 ATGGCCTTAATCTCCTCCATCTCCCCAATACCAGTACCAAAACTCTCAATCTCTACAAAAGCTCAGAACTTCGTTTCTCTAACTTCCTATTCTTCATTTA CTTGCCATTCCCTTCCAATGAAACGATTAAATAAGGGCTGGCCGAAGAATGGAGCACTCTTTACATTTGCTTGTTCAACCTCACCGTTTATAGGAAGAGT TGGGTCACAGAGAAGAGAAGGCAACGTTTCTTTATTGCATTTTGGGATTAACCCAAATGCAGAGGTGGAAAAGACCGATTCTTCTCAGGTCTTATCAGCT ATGCTTCCTTTTGTTGTTGCTGCCACCGCAATAGCTGCTCTTGCTCAGCCTGCCACTTTCACTTGGGTATCTAAGGAGTTGTATGCTCCAGCACTTGGTG GGATCATGTTGTCAATTGGGATTAAACTTTCTATTCATGATTTTGCTCCTGCAATTAAACGACCTTTACCACTATCTGTTGGGTTTATCGCACAGTATGT GCTCAAACCAGGCCTTGGAGTATTAATTGCAAAGGCATTTGGGATGTCTCAGATGTTCTTTGCGGGTTTTGTCTTAACATCTTGTGTTGCAGGAGCTCAG TTATCCAGCTATGCTAGTTTCTTGAGTAAAGGGGATGTAGCCTTGAGCATTCTCCTTACTAGCTCCACTACCATTGCATCAGTCCTTTTCACACCTCTTT TAACTGGTCTTCTCATTGGCTCTGTAGTTCCTGTTGATGCCATTGCCATGTCAAAGTCAATCTTGCAGGTTGTCCTTATTCCAGTCGCCCTCGGCCTCGT ACTAAATACCTATGCAAAGGAAGTTGTAAATTTACTGAATCCTGTCATGCCATTTGTTGCTATGGTGTGCACTTCACTTTGTATTGGGAGTCCACTAGCA ATAAATAGAAGTCAGATTCTTTCCAAAGAGGGTCTCTGGTTGATTTTTCCAGTATTGACATTTCATGCCGTGGCATTCACTTTGGGATATTGGGTCTCAA AAATTCCAGCTTTGAGGCAAGAGGAAGAAGCCAGCAGGACAATTTCATTATGTACAGGAATGCAAAGCTCCACCTTGGCTGGACTTCTAGCTACCCATTT CCTTGGGAGCACACAGGCTGTCCCACCAGCATGCTCTGTAGTTGCCATGGCGATCATGGGTCTTTGTCTTGCCTCTTTCTGGGGTAATGGCTACAGGATA AGAGATATACCATCCTACCTTATCCCTCAATTTGGTTCTGCTGTCAAGGTTTAA
AA sequence Show only first row Show all	>Potri.014G178000.2 pacid=42763992 polypeptide=Potri.014G178000.2.p locus=Potri.014G178000 ID=Potri.014G178000.2.v4.1 annot-version=v4.1 MALISSISPIPVPKLSISTKAQNFVSLTSYSSFTCHSLPMKRLNKGWPKNGALFTFACSTSPFIGRVGSQRREGNVSLLHFGINPNAEVEKTDSSQVLSA MLPFVVAATAIAALAQPATFTWVSKELYAPALGGIMLSIGIKLSIHDFAPAIKRPLPLSVGFIAQYVLKPGLGVLIAKAFGMSQMFFAGFVLTSCVAGAQ LSSYASFLSKGDVALSILLTSSTTIASVLFTPLLTGLLIGSVVPVDAIAMSKSILQVVLIPVALGLVLNTYAKEVVNLLNPVMPFVAMVCTSLCIGSPLA INRSQILSKEGLWLIFPVLTFHAVAFTLGYWVSKIPALRQEEEASRTISLCTGMQSSTLAGLLATHFLGSTQAVPPACSVVAMAIMGLCLASFWGNGYRI RDIPSYLIPQFGSAVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	0	1
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	1.00	0.9922
AT2G48070		RPH1	resistance to phytophthora 1 (...		Potri.014G137300 [exp]	1.41	0.9866
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	3.46	0.9836
AT1G62760			Plant invertase/pectin methyle...		Potri.001G119300 [exp]	3.60	0.9695
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	4.00	0.9727
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	5.29	0.9785
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	6.32	0.9777	RPOD1.1
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	8.36	0.9744
AT5G57960			GTP-binding protein, HflX (.1)		Potri.002G031100 [exp]	8.94	0.9719
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	9.79	0.9700

Compare expression of checked genes

Potri.014G178000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.