Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07010 652 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 648 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 642 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G04680 636 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 632 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 618 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24230 576 / 0 Pectate lyase family protein (.1) AT5G63180 571 / 0 Pectin lyase-like superfamily protein (.1) AT1G67750 565 / 0 Pectate lyase family protein (.1) AT4G24780 564 / 0 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238800 [exp] 795 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 689 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 674 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 581 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 571 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 551 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 551 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 530 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G122000 [exp] 487 / 2e-170 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038157 [exp] 684 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 683 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 682 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 681 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 662 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 551 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 550 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 544 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 531 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 514 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.014G178100.1 pacid=42763875 polypeptide=Potri.014G178100.1.p locus=Potri.014G178100 ID=Potri.014G178100.1.v4.1 annot-version=v4.1 ATGGCGGTTTCGCTAAGATGCTTTTGTACATGGACATTGCTGGTTCTAGTTATGTTTCTCAGTGTAAACGCTGCGGAAGAGAAAGACGAGCTGAAATTGA GGTTGAAGGAAACGCAGGAGTTGCTAAGGTCAAAGAACTCGTCGATGGCAGAGTGGTCTGATGATGCATGGAACGAGCATACTGTAGAGGATTCAGAGGA GGTGGCTGCAATGGTTGATGAGAGCATACGCAACAGCACTGAAAGGAGGAAATTGGGATTTTTCTCATGCGTAACTGGCAATCCTATTGATGATTGTTGG CGATGTGATCCCCATTGGCAACTCCACAGAAAGCGCCTTGCTAACTGTGGCATTGGTTTTGGACGCAATGCTGTCGGAGGTCGCGATGGAAAATACTATG TTGTTAGCAACCCTGGCGATGATGACCCTGTTAACCCAAGACCAGGGACTCTACGCCATGCTGTCATTCAAGACCAGCCTTTGTGGATTGTGTTCAAGAG GGACATGGTGATTACCCTCAAGCAAGAGCTTATCTTGAACAGCTTCAAGACCATAGATGCTCGTGGAACCAATGTCCACATTGCCAACGGGGCTTGCATC ACCATCCAGTTTGTCTCGAATGTCATAATTCATGGTCTCCATATACATGATTGTAAGAGTACAGGCAATGCGATGGTTCGTAGCTCGCCTAGCCATTACG GGTGGAGAACTATGGCTGACGGAGATGGTATCTCCATTTTTGGAGCAAGCCACATATGGATCGATCACAATTCTCTTTCAAATTGCGCCGATGGCCTTAT TGATGCTATAATGGGGTCCACCGCCATTACCATCTCGAACAACTATTTCACTCACCATAACGAGGTTATGCTATTAGGCCACAGTGACTCCTATAAAAGA GATAAGCAGATGCAAGTGACCATTGCCTATAACCATTTTGGTGAAGGTCTTATCCAGAGAATGCCCAGGTGCAGGCATGGGTATTTCCACGTAGTGAACA ATGACTACACGCACTGGGAAATGTATGCCATTGGAGGGAGTGCTAATCCCACGATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCCAACGCTTTTGC CAAAGAGGTGACAAAAAGGGTAGACACGGAAACTGGAGTCTGGAGTCATTGGAATTGGAGATCAGAAGGCGACCTCCTGCTAAACGGAGCCTACTTCATT CCATCAGGAGCTGGAGCTGCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGGGCCAAGTCCTCATCGATGGTCGGGGTCATCACTTCAAATGCTGGAGCCC TAGTCTGCCGCAGGGGCCGCCGATGTTAA
AA sequence Show only first row Show all	>Potri.014G178100.1 pacid=42763875 polypeptide=Potri.014G178100.1.p locus=Potri.014G178100 ID=Potri.014G178100.1.v4.1 annot-version=v4.1 MAVSLRCFCTWTLLVLVMFLSVNAAEEKDELKLRLKETQELLRSKNSSMAEWSDDAWNEHTVEDSEEVAAMVDESIRNSTERRKLGFFSCVTGNPIDDCW RCDPHWQLHRKRLANCGIGFGRNAVGGRDGKYYVVSNPGDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELILNSFKTIDARGTNVHIANGACI TIQFVSNVIIHGLHIHDCKSTGNAMVRSSPSHYGWRTMADGDGISIFGASHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYKR DKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPANAFAKEVTKRVDTETGVWSHWNWRSEGDLLLNGAYFI PSGAGAAASYARASSLGAKSSSMVGVITSNAGALVCRRGRRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07010			Pectin lyase-like superfamily ...		Potri.014G178100 [exp]	0	1
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	10.00	0.8627
AT2G04890	GRAS	SCL21	SCARECROW-like 21 (.1)		Potri.019G085600 [exp]	14.66	0.8528
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	15.23	0.8607
AT5G17910			unknown protein		Potri.013G068800 [exp]	15.58	0.8396
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	15.87	0.8553
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	19.36	0.8576
AT5G03110			unknown protein		Potri.016G086900 [exp]	26.83	0.8408
AT3G03210			unknown protein		Potri.017G139800 [exp]	33.67	0.8501
AT2G27740			Family of unknown function (DU...		Potri.004G186900 [exp]	36.74	0.8213
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.001G090300 [exp]	38.00	0.8206

Compare expression of checked genes

Potri.014G178100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.