Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 816 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 589 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 59 / 4e-09 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238600 [exp] 926 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 600 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 587 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 65 / 7e-11 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011882 [exp] 887 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 761 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 714 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 691 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 682 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 630 / 0 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 591 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 584 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10020381 [exp] 536 / 0 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 254 / 9e-80 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [poplar] [flax] GT-B PF03033 [poplar] [flax] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G178300.1 pacid=42762440 polypeptide=Potri.014G178300.1.p locus=Potri.014G178300 ID=Potri.014G178300.1.v4.1 annot-version=v4.1 ATGGCGGAGTCGCAGCAACGGAGTTCGTCTTCTTCTTCGTCTTCTTCGAGTTCCGGCGAAATCTCGGTAAGAATCGAAGGGGAAATCAGCATTGGTGTTG AAACCAGCGGTGATGGTAATGAATTGGAGAGCAGAGAGGCAGTTGATGTTGCTTCAGTTAGTAACGGAATCAGCGGCGGCGGGACATCAAACACTTCAAT GGCTGAAAAGCCTGGTGTCTACAAATCAGAATCAACTCCGAGTCGGCTTAAGTTAGAAAGATCCAAAACTGAGGGGCAAAGGCATCAAAATATACTTGCT GAAGAGGCTGCAAAAATTTACGATGACAAGCTTCCTGATCAGGAGAAGCGTATATTGTTGAACAGAATGGCAACTGTCAAAGATAATGGAACTGTAGAAG TTGTGGTTCCAGGGGATGTCGAACCCCGAACTCTTGGGGTCGGATCTGATTATGCATGTAATACAGTTGCTGATGACGAGCCTCTTGATGCAACAGACCA GTATATACCGCCACTGCAAATAGTAATACTCATTGTTGGCACGCGAGGAGATGTGCAGCCATTTATTGCGATAGGTAAACGTCTACAGGATTATGGCCAT CGTGTTAGACTGGCAACTCATTCAAATTTTAGAGAATTTGTCTTGACAGCTGGGTTGGAGTTTTTTCCTTTGGGTGGAGATCCTAAAGTTCTTGCTGGTT ACATGGTAAAAAATAAAGGATTCTTGCCATCAGGGCCTTCTGAGGTATCCATTCAACGAAATCAAATAAAAGAAATTATATACTCCTTACTTCCTGCCTG CAAGGATCCTGATATTGATTCCAAAATCCCTTTTAGGGCAGATGCTATCATTGCCAATCCTCCAGCATATGGGCATACTCATGTGGCAGAGGCCCTAAAA GTACCACTTCATATATTCTTCACCATGCCATGGACGCCAACTAGTGAATTTCCTCATCCCTTGTCGCGTGTCAAGCAATCAGCTGGATATCGACTTTCAT ATCAAATAGTCGATTCGATGATTTGGCTGGGAATACGGGACATGATAAATGATTTAAGGAAAAAAAAGTTGAAGCTACGACCTGTCACTTATCTCAGTGG TTCACAGGGATCTGATTCTGACGTGCCATATGGATACATATGGAGTCCTCACCTTGCCCCTAAACCCAAAGATTGGGGGCCTAAAATTGATGTGGTAGGC TTCTGCTTTCTTGACCTAGCATCAAATTATGAACCTCCTGAACCGCTTTTGAAATGGCTTGAGGCTGGTCAGAAACCTATTTATATTGGATTTGGTAGTC TTCCTGTCCAAGAACCAGAAAAAATGACCCAAACAATTGTTGAAGCACTGGAGCAAACTGGGCAGAGGGGCATCATTAATAAAGGCTGGGGTGGCCTGGG CAACTTGGCAGAACCGAAGGACTTTATATACCTACTGGATAACTGTCCTCATGATTGGCTATTCTTGCAATGCAAGGCAGTGGTTCATCATGGAGGTGCT GGAACAACAGCTGCTGGTCTTAAAGCTGCGTGCCCTACAACCATTGTGCCTTTCTTTGGTGACCAACCCTTCTGGGGTGAGCGGTTGCATGCGAGAGGAG TAGGTCCTCCACCCATACCTGTTGATGAGTTCTCACTTACCAAGTTGGTTGAGGCGATACATTTCATGCTAGATCCCAAGGTGAAGGAGCGCGCGGTGGA GCTTGCCAAAGACATGGAGAATGAGGATGGTGTTGATGGAGCTGTAAAAGCATTCTTCAAGCATCTCCCTCGAAAAAAGCCCGAGCCTGAGCCCGAGTCA GAGCCGTCAACGGAACCATCAAGTATTTTCTCCTTCAGTAAATGTTTTGGTTGTCCCTGA
AA sequence Show only first row Show all	>Potri.014G178300.1 pacid=42762440 polypeptide=Potri.014G178300.1.p locus=Potri.014G178300 ID=Potri.014G178300.1.v4.1 annot-version=v4.1 MAESQQRSSSSSSSSSSSGEISVRIEGEISIGVETSGDGNELESREAVDVASVSNGISGGGTSNTSMAEKPGVYKSESTPSRLKLERSKTEGQRHQNILA EEAAKIYDDKLPDQEKRILLNRMATVKDNGTVEVVVPGDVEPRTLGVGSDYACNTVADDEPLDATDQYIPPLQIVILIVGTRGDVQPFIAIGKRLQDYGH RVRLATHSNFREFVLTAGLEFFPLGGDPKVLAGYMVKNKGFLPSGPSEVSIQRNQIKEIIYSLLPACKDPDIDSKIPFRADAIIANPPAYGHTHVAEALK VPLHIFFTMPWTPTSEFPHPLSRVKQSAGYRLSYQIVDSMIWLGIRDMINDLRKKKLKLRPVTYLSGSQGSDSDVPYGYIWSPHLAPKPKDWGPKIDVVG FCFLDLASNYEPPEPLLKWLEAGQKPIYIGFGSLPVQEPEKMTQTIVEALEQTGQRGIINKGWGGLGNLAEPKDFIYLLDNCPHDWLFLQCKAVVHHGGA GTTAAGLKAACPTTIVPFFGDQPFWGERLHARGVGPPPIPVDEFSLTKLVEAIHFMLDPKVKERAVELAKDMENEDGVDGAVKAFFKHLPRKKPEPEPES EPSTEPSSIFSFSKCFGCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.014G178300 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	3.16	0.8946
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	4.89	0.8766
AT5G17910			unknown protein		Potri.013G068800 [exp]	7.54	0.8481
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.015G118000 [exp]	8.48	0.8229
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	13.41	0.8310
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.015G048100 [exp]	14.49	0.8285
					Potri.001G022601 [exp]	24.41	0.8375
AT3G05545			RING/U-box superfamily protein...		Potri.005G024700 [exp]	33.54	0.8189
AT5G42090			Lung seven transmembrane recep...		Potri.003G147700 [exp]	33.88	0.8309
AT3G03210			unknown protein		Potri.017G139800 [exp]	37.01	0.8322

Compare expression of checked genes

Potri.014G178300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.