Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29000 115 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1) AT5G24580 52 / 1e-07 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G50740 52 / 1e-07 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 49 / 9e-07 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT4G38580 42 / 0.0001 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT3G05220 43 / 0.0002 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G60800 42 / 0.0003 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G06330 40 / 0.0007 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 40 / 0.0009 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003900 [exp] 60 / 2e-10 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.012G007300 [exp] 60 / 3e-10 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G099500 [exp] 50 / 5e-07 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 45 / 2e-05 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.005G110400 [exp] 44 / 3e-05 AT5G66110 189 / 2e-62 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) Potri.016G017600 [exp] 43 / 7e-05 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 43 / 0.0001 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.009G007600 [exp] 42 / 0.0002 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G214700 [exp] 42 / 0.0002 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011893 [exp] 108 / 1e-27 AT1G29000 162 / 5e-48 Heavy metal transport/detoxification superfamily protein (.1) Lus10022827 [exp] 73 / 3e-15 AT1G29000 59 / 2e-10 Heavy metal transport/detoxification superfamily protein (.1) Lus10015583 [exp] 62 / 5e-11 AT5G24580 314 / 6e-107 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10032923 [exp] 59 / 6e-10 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10014421 [exp] 43 / 0.0001 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 43 / 0.0002 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10038785 [exp] 42 / 0.0002 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 42 / 0.0002 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10021516 [exp] 42 / 0.0004 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.014G178800.1 pacid=42762554 polypeptide=Potri.014G178800.1.p locus=Potri.014G178800 ID=Potri.014G178800.1.v4.1 annot-version=v4.1 ATGGCCGAAGCTGCCAAAGTAGCTGAGAAAGATGTGATCACCGCTGTCTACAAAGTTAACCTGCACTGCCAGCAATGTGCACGGGATATCAAGAAGCCTC TTCTGTCCACCCAAGGGGTTCACAGCGTGGAGGCTGATGCTGAGAAGTCCGAAATCAAGGTTAAAGGGGTGATTGACGTGATAAAAATACACAAACTACT AGAGAAATTGAGCAAGAAAAAGGTTGAGCTGGTTTCACCATTGGTTAAGGTCACAGAATCTGTAACGGAGAAGAAGGAAGTAAAGGTTGAAGCCAAACCA GCTCCAAAATTAAGCACCCATTCTATAAAGGTTCACTTGCACTGTGATAAATGTGAGAAAGATCTGCGCGATAAGTTACTGAAGCACAGAAGTATTTACA GTGTGAAGACGGACATGAAAGCACAGACTATAACAGTTGACGGAACAATGGAGGGTGATAAACTAGTAGCTTACATGCGAAAGAAGGTGCACAAAAATGC AGAGATTATACCCCCAAAATCTGAGAAAATGGAGGAAAAGAAAGAAAAGCCAAAAGTCGAGGCTAAACCCAAAGAAGAAAAGGCTGAAATGGTGGAATTC AAGGCAGAGAAGAAAGAAGAAAAGGCTGAAATGGTGGAATTCAAGGCAGAGAAGACAGTGGAGGTAAAGACTACAGAGAGAGTTGCGCCTTATGTTGTTA ACTATGTCTATGCTCCTCAGTTTTTTAGTGGTGAAAATCCACATGACTATGTCTATGCTCCTCAGTTATTTAGTGATGAAAATCCACATGCTTGTTTTAT AATGTAG
AA sequence Show only first row Show all	>Potri.014G178800.1 pacid=42762554 polypeptide=Potri.014G178800.1.p locus=Potri.014G178800 ID=Potri.014G178800.1.v4.1 annot-version=v4.1 MAEAAKVAEKDVITAVYKVNLHCQQCARDIKKPLLSTQGVHSVEADAEKSEIKVKGVIDVIKIHKLLEKLSKKKVELVSPLVKVTESVTEKKEVKVEAKP APKLSTHSIKVHLHCDKCEKDLRDKLLKHRSIYSVKTDMKAQTITVDGTMEGDKLVAYMRKKVHKNAEIIPPKSEKMEEKKEKPKVEAKPKEEKAEMVEF KAEKKEEKAEMVEFKAEKTVEVKTTERVAPYVVNYVYAPQFFSGENPHDYVYAPQLFSDENPHACFIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	0	1
AT5G22810			GDSL-like Lipase/Acylhydrolase...		Potri.009G151000 [exp]	2.00	0.9735
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	3.46	0.9722
					Potri.017G046750 [exp]	3.60	0.9599
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	5.47	0.9712	CYP86A19,Pt-CYP86.4
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	5.65	0.9714	3
AT1G70140		ATFH8	formin 8 (.1)		Potri.010G037900 [exp]	5.74	0.9281
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	6.70	0.9714
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.014G090700 [exp]	6.92	0.9633
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	7.74	0.9695
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	8.77	0.9695

Compare expression of checked genes

Potri.014G178800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.