Plant FIBer expression Database

Potri.014G179200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G145066
[exp]
50 / 2e-09 AT1G32460 / unknown protein
Potri.003G089100
[exp]
40 / 5e-06 AT1G32460 42 / 2e-06 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011059
[exp]
42 / 6e-06 ND 39 / 1e-04
Lus10040104
[exp]
39 / 2e-05 ND 36 / 5e-04
Lus10030943
[exp]
36 / 0.0004 ND /
PFAM info
Representative CDS sequence
>Potri.014G179200.3 pacid=42762972 polypeptide=Potri.014G179200.3.p locus=Potri.014G179200 ID=Potri.014G179200.3.v4.1 annot-version=v4.1
ATGGAAAAGATATCTTCTGGCAAAGAGGTTCATGAGAAGGAAGTAGCAGCAAGGGAGTCGCTCATAGATATCTCGGACTTGTTGCCGGAAAACTCAAACA
GCACTGAGAGGCCGAGTGAAGTGAAAGATTATTTTGATGGAACAGAAAAGTATAGATCTGAACTGATCTCCATATCCAATTCGCAATCACCAGATATCAC
AGGCCTACCAGTTCCACTTGGAGAACCGAGCGATTAG
AA sequence
>Potri.014G179200.3 pacid=42762972 polypeptide=Potri.014G179200.3.p locus=Potri.014G179200 ID=Potri.014G179200.3.v4.1 annot-version=v4.1
MEKISSGKEVHEKEVAARESLIDISDLLPENSNSTERPSEVKDYFDGTEKYRSELISISNSQSPDITGLPVPLGEPSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G179200
[exp]
0 1
AT1G69523 S-adenosyl-L-methionine-depend... Potri.008G088500
[exp]
2.00 0.9513
AT2G42920 Pentatricopeptide repeat (PPR-... Potri.005G202600
[exp]
7.87 0.9345
AT5G24910 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P... Potri.014G052000
[exp]
9.94 0.9061
AT5G55280 ATFTSZ1-1, CPFT... CHLOROPLAST FTSZ, ARABIDOPSIS ... Potri.001G359500
[exp]
12.64 0.9249 Pt-FTSZ.1
AT5G61490 Uncharacterised conserved prot... Potri.014G057200
[exp]
12.96 0.9243
AT3G15353 ATMT3, MT3 metallothionein 3 (.1.2) Potri.011G118900
[exp]
14.31 0.8642
AT3G01920 DHBP synthase RibB-like alpha/... Potri.001G330100
[exp]
16.61 0.8998
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.006G160300
[exp]
17.66 0.9164
AT4G37300 MEE59 maternal effect embryo arrest ... Potri.009G041100
[exp]
22.44 0.9066
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Potri.016G099400
[exp]
22.97 0.9272 IM30.2

Potri.014G179200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.