Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 791 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 769 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 599 / 0 Major facilitator superfamily protein (.1) AT3G54140 456 / 2e-154 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 435 / 5e-146 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 431 / 1e-144 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 416 / 9e-139 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 399 / 2e-132 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G54450 347 / 1e-112 Major facilitator superfamily protein (.1) AT5G46050 341 / 9e-110 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 854 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 829 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 656 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 635 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 464 / 2e-157 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 447 / 3e-151 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 444 / 1e-149 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 436 / 6e-147 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 435 / 2e-146 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030945 [exp] 805 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 797 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 785 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 777 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 593 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 591 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 472 / 4e-160 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 448 / 3e-151 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 447 / 5e-151 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 450 / 6e-150 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G179400.1 pacid=42762628 polypeptide=Potri.014G179400.1.p locus=Potri.014G179400 ID=Potri.014G179400.1.v4.1 annot-version=v4.1 ATGGCCTGCTTAAATATTTGCAAAGAGGAAGGAAGCGTGCAGGGGAAGCTCGTGAAGAAGGAGCAGGAGGTTTGCACTAGGGATGGAAGCGTTGATCGAC ATGGCGATCCTGCAATCCGGGGGAGGACTGGGACTTGGTTCGCTGGAATCCTCATATTAGTGAATCAAGGGCTGGCGACGTTGGCCTTCTTTGGGGTAGG AGTGAACTTGGTTCTGTTTTTGACAAGAGTGTTGGGTCAAGACAATGCCGAAGCTGCAAACAACGTCAGCAAATGGACTGGAACTGTTTACATATTCTCT CTTCTCGGCGCCTTCCTCAGCGACTCTTACTGGGGGAGGTACAAGACTTGTGCTATCTTCCAGGCCATCTTCGTCACTGGTCTGGTATTGTTGTCACTGT CTTCCTACTTATTCTTACTCAAACCGAGAGGCTGTGGTGATGAACATTCTCCATGTGGATCCCATTCAACATACCAGAATGTCTTTTTCTACTTCTCCAT CTATCTTGTTGCCCTTGGAAATGGAGGCTACCAGCCTAACATTGCTACCTTTGGGGCTGATCAGTTTGATGAAGAGGACCCTAAAGAAGGCCACTCTAAG ATAGCTTTCTTTAGCTACTTTTACTTGGCTCTCAACCTTGGTTCTCTCTTTTCGAACACCATATTGGGCTATTTTGAGGACCGGGGCATGTGGGCGTTAG GATTCTGGGCATCTGCTGGCTCTGCTCTTTTGGCACTGGTCTTGTTTCTCATTGGGACTCCCAGGTATAGACACTTCACCCCCAAGGGCAACCCCCTCTC TAGGTGTTGCCAGGTGATGGTTGCTGCAACAAGAAAATGGAAGGTTCAGAGGATGCCAAATCAAGGTGATGATCAGTTTGAATCGGATGTCCCAAAGGAC GGTTCCAAAAATGGGGATAGAAAGATACTACACACCCAAGGATTCAGATTCTTGGATAGAGCTGCAATTATTACATCCAAGGATTATACAGAGAATCGCA TTCACGATCCATGGCGTGTCTGCACAGTAAATCAAGTTGAAGAATTTAAATGCATCCTACGACTCCTCCCTATCTGGCTGTGCACAATTCTTTACTCTGT AGTTTTCACTCAAATGGCATCACTCTTCGTCGAACAAGGTGCTGATATGAAAACTACGATTTCGAAATTCCACATTCCTCCAGCAAGCATGTCTAGTTTC GACATACTCAGTGTTGCGGCTTTCATATTCATCTATAGGAGAGTTCTTGATCCCCTTGTTGCCAGAATAAGAAAGGACCCTAAGGGCCTGACAGAGCTTC AGAGGATGGGGATTGGTCTAGTTATCGCAATAATTGCAATGGTTTCGGCAGGGATTGTAGAGCTATTCAGGTTGAAGTACGCAAGAAAAGACTGTCCAAG ATGCGAAAGTGCGAGTTCTTTGAGCATACTTTGGCAAATTCCTCAATATGTTCTGATAGGAGCATCTGAGGTGTTCATGTATGTGGGGCAATTAGAATTC TTCAATGGGCAAGCACCTGATGGATTGAAGAGCTTCGGCAGTGCACTTTGCATGACATCAATATCTCTAGGCAACTATGTGAGTAGCTTGCTAGTAACAG TCGTAATGAAGATATCTACCAGAGATGAGATGCCAGGATGGATCCCAGGAAACCTTAACAAGGGTCATCTAGACAGATTTTTCTTCCTCTTGGCAGTTTT GACAACCGCAGATCTTGTTCTGTACATTATCTGTGCTAGATGGTACAAGTACATCAAGTTTGAGAGGCAGCAGGAAGCGGATAGTATATTAAGCAATGAA GAGGCAGACCTTAGAGTTTGA
AA sequence Show only first row Show all	>Potri.014G179400.1 pacid=42762628 polypeptide=Potri.014G179400.1.p locus=Potri.014G179400 ID=Potri.014G179400.1.v4.1 annot-version=v4.1 MACLNICKEEGSVQGKLVKKEQEVCTRDGSVDRHGDPAIRGRTGTWFAGILILVNQGLATLAFFGVGVNLVLFLTRVLGQDNAEAANNVSKWTGTVYIFS LLGAFLSDSYWGRYKTCAIFQAIFVTGLVLLSLSSYLFLLKPRGCGDEHSPCGSHSTYQNVFFYFSIYLVALGNGGYQPNIATFGADQFDEEDPKEGHSK IAFFSYFYLALNLGSLFSNTILGYFEDRGMWALGFWASAGSALLALVLFLIGTPRYRHFTPKGNPLSRCCQVMVAATRKWKVQRMPNQGDDQFESDVPKD GSKNGDRKILHTQGFRFLDRAAIITSKDYTENRIHDPWRVCTVNQVEEFKCILRLLPIWLCTILYSVVFTQMASLFVEQGADMKTTISKFHIPPASMSSF DILSVAAFIFIYRRVLDPLVARIRKDPKGLTELQRMGIGLVIAIIAMVSAGIVELFRLKYARKDCPRCESASSLSILWQIPQYVLIGASEVFMYVGQLEF FNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTVVMKISTRDEMPGWIPGNLNKGHLDRFFFLLAVLTTADLVLYIICARWYKYIKFERQQEADSILSNE EADLRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.014G179400 [exp]	0	1
					Potri.010G007899 [exp]	2.00	0.9272
AT3G25400			unknown protein		Potri.002G235000 [exp]	2.00	0.9314
					Potri.019G001604 [exp]	2.82	0.8591
					Potri.001G048400 [exp]	3.00	0.9054
AT3G03280			unknown protein		Potri.016G128800 [exp]	3.46	0.9030
AT4G20820			FAD-binding Berberine family p...		Potri.011G162732 [exp]	4.58	0.8803
AT3G25400			unknown protein		Potri.014G148200 [exp]	5.74	0.8524
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Potri.005G176000 [exp]	6.48	0.8878	DREB39
					Potri.001G027950 [exp]	7.74	0.8375
AT4G33800			unknown protein		Potri.014G015000 [exp]	8.12	0.8136

Compare expression of checked genes

Potri.014G179400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.