Plant FIBer expression Database

Potri.014G179800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17668 148 / 4e-46 ENA ENHANCER OF ATNSI ACTIVITY, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G210500
[exp]
41 / 0.0003 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G179800.2 pacid=42764397 polypeptide=Potri.014G179800.2.p locus=Potri.014G179800 ID=Potri.014G179800.2.v4.1 annot-version=v4.1
ATGGCAGGGAGCACGGCGGCGGCGACTCTGCTGACGGCTGTCTGGTTGGATCAACTAGAATTGGACAGCGCAAAGAATAGTAAGAAGACAGCGGTTGTTG
CAGGAAAAGAAGAAAGTTTTGGTACAAGTAGAAGAAACCCACGCCACCTTTCCCTCACAAAGCCATCTTGGATTGTCAGAACAGAGTCAAATGTACGGAA
AGAAATAAGGAAGAGGCCAGACCCACCTTGTGAGGTCTGCCATGGAACTGGTAGAGTTGATTGCCCCCATTGTTCTGGACAAGGCAGGACTAACTGTGTG
CATTTAGCAATGCTTCCTGAAGGTGAATGGCCTAAATGGTGCAGGACTTGTGGTGGCAGTGGCCTCAGCTACTGCTCCCGTTGCCTTGGAACTGGAGAGT
ATAGGTATATCATGGGCTTCCACTTCATGATGGCTTCTGATGACACCAAAAACCACCCGCAGCAGCATCAGACACCCGCTAAGAGTACAGCTGCCGGGGG
GCCTCTCGACGTAGAAGATTTGGATTCAAACCATGACATCTGA
AA sequence
>Potri.014G179800.2 pacid=42764397 polypeptide=Potri.014G179800.2.p locus=Potri.014G179800 ID=Potri.014G179800.2.v4.1 annot-version=v4.1
MAGSTAAATLLTAVWLDQLELDSAKNSKKTAVVAGKEESFGTSRRNPRHLSLTKPSWIVRTESNVRKEIRKRPDPPCEVCHGTGRVDCPHCSGQGRTNCV
HLAMLPEGEWPKWCRTCGGSGLSYCSRCLGTGEYRYIMGFHFMMASDDTKNHPQQHQTPAKSTAAGGPLDVEDLDSNHDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17668 ENA ENHANCER OF ATNSI ACTIVITY, Dn... Potri.014G179800
[exp]
0 1
AT3G22210 unknown protein Potri.006G021100
[exp]
2.82 0.9468
AT5G58770 Undecaprenyl pyrophosphate syn... Potri.001G250900
[exp]
3.46 0.9132
AT4G29400 Protein of unknown function (D... Potri.014G148300
[exp]
5.29 0.9476
AT1G07700 Thioredoxin superfamily protei... Potri.014G029200
[exp]
14.59 0.9329
AT2G34620 Mitochondrial transcription te... Potri.011G081400
[exp]
14.96 0.9242
AT5G41761 unknown protein Potri.003G136700
[exp]
17.54 0.9193
AT1G20340 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REP... Potri.005G246100
[exp]
17.88 0.9189 Pt-PETE.1
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.012G040900
[exp]
20.19 0.9042
AT3G52170 DNA binding (.1.2) Potri.008G029500
[exp]
20.34 0.8383
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Potri.001G225100
[exp]
21.00 0.9076

Potri.014G179800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.