Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08840 1527 / 0 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT2G03270 148 / 1e-36 DNA-binding protein, putative (.1) AT5G35970 138 / 7e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 123 / 6e-28 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 102 / 1e-21 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05460 102 / 1e-21 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 81 / 4e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 77 / 4e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 73 / 8e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 71 / 8e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054600 [exp] 154 / 2e-38 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.013G073900 [exp] 136 / 4e-32 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G148100 [exp] 130 / 4e-30 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 125 / 9e-29 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.005G047500 [exp] 107 / 2e-23 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 94 / 3e-19 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 93 / 9e-19 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 86 / 2e-16 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 83 / 1e-15 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010991 [exp] 1522 / 0 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10026309 [exp] 150 / 6e-37 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10024974 [exp] 133 / 3e-32 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024527 [exp] 133 / 4e-31 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042360 [exp] 126 / 9e-30 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10003024 [exp] 128 / 2e-29 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 127 / 4e-29 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10038906 [exp] 96 / 2e-19 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 94 / 4e-19 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035776 [exp] 89 / 2e-17 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [poplar] [flax] PDDEXK PF01930 [poplar] [flax] Cas_Cas4 Domain of unknown function DUF83 CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.014G180200.1 pacid=42764319 polypeptide=Potri.014G180200.1.p locus=Potri.014G180200 ID=Potri.014G180200.1.v4.1 annot-version=v4.1 ATGCCTCCAAAGAAGAAATCCAAGTCGTCTTCTTCTTCAACCTCATCAGCGAAGAAAAACCATCAAAACTCACAGCAGCAGCAGCAGCAGCAGCAGCAGC AACAACCTTCCAAGTTTGGAATCCAACATTTCTTCAATCTCCACACACAAAACGCACTTTCCCTCTCTCAAAATCCCCAACCTCCACCCACTCCTCCAAT TCCCCAAACCCTCTCTCAAAACCCTATAATTTCCCCTAATTCTCTAAACCCTAAATTTGCGCCACCCTCCAATTCTCACCACCTCGATGCCGACGATAAC GTGATGGATGTCTCACCTGAAATCACCAAGTCGGTGTCTCTCCAACGCTTCAAGTTCTCTCCTGGAATGTTGATAAAGCAGAGCCAGGATGATGGTGGCG ATGAGGTCACATGGAAGATATCTCCGGTTAGTGAAAGACTCCAAGCTGTCTCCAAGCAAATGCCCCAACTCATTCAACTCTTAGCTGAAACTTCAAAGCT TAATTCTTTCAGCATTCGTCCTTGTTCCTCTTTAAATGACGAGATTTCATCTGGTACTGCTGGCAAGGTTGATAAGCAGGTTCCTTCACCTCCATGGAAG GGTGCTGACAGATCTTTGGTGCCTGCTAGTAGAGTTGGATTGAAAAGAATAAACCCACGTCAGGATGTAAATTTGACTGATGTTAATTGCTCGCTTGCTG GTCGACAAAGTCCTTTCAGAACTCCGCCGTCCCTTTCGTATTGTCACGAAAAGCTTTCTAATGTTGCTGAATGCAATGGAGCATCAGATCAACTGGATCA AAGGCAACACAAAAAGGCATTGCTTGAGCTTTTGGATCAAGTAGAAGATGCAATTTCTGTTGAAGATTCAGAACCTAGTACTGTCAATTCATCTAAAACT CAAGATGGAAATGGTTATGACATGCCCTGCAATGCTGGATCTCTAGTAAAAGAAGCAGCAATAGATCCACCAGAAAGTGTTGCTGTGCCATTGTCAAATT ATAATTTTCTTGTATTGGAGGTATCTGAGAAGCACAGGCCCGCGGATTTATCTGGTGCTCAATGCCCTTATAAGGTTCTTCGATTGTTGAATGAGCAAAG TGGAGAAGAGCGAACTGTCTATTTGTGGGAAGAGTGGTTCTATAGTGTCATTTCACCTGGAGATACTGTAAATGTGATTGGTGAATTTGATGACCAAGGA AAGTGTGACGTGGATCGTGACAATAATCTCTTAATTGTTCATCCTGACATTCTAGTCTCTGGAACTCGGGTTGCTGCTAGTTTCAGTTGTCCACGTCGAA CTGTTTTAGATGAGAGACTAAAATGCAGTGAGCATTCAACTGCTGCATTAATTGGTACCTTGCTGCACCAAATTTTTCAGGCTGGACTCATGCAAGATAA TCCTACCATAAACTTTTTGGAGGAATATGCTAGAATAGTACTCCAGAAAAATATTGAAAGCCTGCATGCATGTGGAGTAAATGAAAATGATATCTTCAAT ACTTTGGTTGAGGCAATTCCTAAACTAATAAATTGGATCAACCTGTTCAAAGATTCACAGGATTCAAAAGCCCCCATTATTGATTTTGGTCCTGACAATG GATTGAAAAAGCTAAGTATATCTGAGGTGATTGATATCGAGGAGATGGCATGGGCCCCAAAATATGGGTTGAAAGGAATGATTGATGCTTCTGTCCGCGT TAAAGTAGAGTCAGGCAGAAATAAAGCAGATGAGAAGATTGTGCCTCTAGAGTTTAAAACTGGGAAAGTTTCCAATGGGCAGTCATCCATGGAACATGTA GCCCAAGTGATTTTGTACACTCTTCTCATGTCTGAGAGGTATCTGAAACATATTGATTCTGGTCTTCTGTATTACCTCCAATCAGATCAGACACGGGGAA TCACGGTTCAAAGGTCTGATGTGGTTGGGCTAATCATGCGTCGAAATGAGCTTGCAAATGACATCCTTAAGGCATCAAGAACTCAACAATTGCCTCCAAT GCTACAGAGCCTAAATATGTGCAGAAGTTGCCGCCATCTTGATGTTTGTACAATCTATCATAAGGTGCATGGTGGAAGCAAAGAGAGTAGTGGACTAGGT GATCTGTTTGATTCACATGTTCATCATCTGACAACTGCTCATTATGTTTTTCTTCGACGCTGGGATCAGTTGATTGACTTAGAGGCTAAAGAGACACAGC TTGTAAAAAACAGAATATGGCGTCCACATAGTTTGAAGAGTGATCGTTCCACTAGTTGCCTTTCTTCTGTTGTTCTTGATACTTCAGATCGAGTTCCATA TCAGAAATCTCTCAAAGACAACCGATTCATTTATCGTTTTGTCCATAAAAAAATGCCTCTTCATGACGTGCATGCTTCTGGTGGAGAATCTTTGAGTTTT CCTTCATCTTCGGCAGAAGATTTCGATTATACACTTAAAAGTGGAGACTATGTGATTATTAGTACCAAATTTGGCCATCAAACTGTAGCAAGTGGGTTCA TAACAGATATCAGTCGGTCCCATGTTTCTGTTTCTTTTCCTAAGCACTTAAGACTCCCTGGCAGCAATTCTTCGTCAGAAGCACATAATCTCTTTAGGGA GGTCTGGCAGATTGACAAGGACGAGTTTATGACTTCATTTTCAGTTATGCGGTTCAACCTTGTACAACTGTTTCTCCAAAGTGAACAAAGTTCTCACCTT AGGAAGATGATTGTTGATCTTGAGGCTCCTCGATTTGACAGTGGATGTATATTTAGTCAAGATCCAGCCCTATCTTATATATGGTCAGTGAAGAATTTAA ATGGAGATCAGCGTCGGGCAATTCTGAAGACTCTTACAGCTAAGGATTATGCTCTAATACTAGGGATGCCTGGAACTGGAAAGACATCGACCTTGGTACA TGCTGTCAAGGCCATGTTGATGAGAGGTGCATCCATTTTGCTCACGTCCTACACAAACTCTGCAATTGATAATTTACTAATCAAATTAAAAGCTCAGGGT ATTGATTTTCTACGAATTGGAAGACATGAAGTTGTCCATGAGGAAGTCCGTGCCAATTGCGTTTCTGCAATGGATGTACACAGTGTAGAAGACATTAAAT TAAGATTAGAGCAAGTCAAGGTTGTTGCAGTAACTTGCTTGGGAATTTCTAGTCCCTTGCTTGCCAACAAGAAATTTGATGTATGCATCATGGATGAAGC TGGACAAATTACCCTCCCAATAGCTTTGGGACCCTTGATGTTTGCTTCAAAGTTTGTTCTTGTTGGTGATCACTATCAACTGCCTCCACTTGTCCAGAGT ACAGAGGCTCGCGAGAATGGAATGGGGATAAGTTTGTTTTGTAGGCTTTCTGAGGCACATCCTCAAGCAATTTCAGCTTTGCAAAGCCAGTACCGCATGT GTCAAGATATTATGGAACTATCAAATGCCTTGATATATGGTGACAGACTGCGTTGTGGTTCTTCTGAAATAGCAAATGCCAGGCTTAAATTTTCAGGTTT ACAGTCCTGTTCATCGTGGCTAAAGGAGGTATTAAATCCTGGCAGACCCGTCATATTTATTAACACAGATATGCTGCCAGCTTACGAGGCAAAGGACTCC AAAACTGTGAATAACCCAATAGAAGCTTACATAGTTGCAGAGGTCACAAAGGAATTACTTAATAATGGGATTGTAGGTGATGATATTGGCATTATTACCC CTTATAATTCCCAGGCAAATCTCATCCGAGCTTCTGTTAACGTAACCTCTGTGGAGATTCATACCATTGATAAATACCAGGGAAGAGACAAGGAATGCAT ACTGGTATCCTTTGCTAGGTCCAGTGAAAATCCAAGAAATTGTACGTCTTCGTTGCTTGGAGATTGGCATAGGATTAATGTGGCGCTCACACGAGCCAAG AAAAAGTTGATCTTAGTAGGGTCGTGCAAAACCCTGTCAAAGGTCCCGCTGCTGAAGCTTCTTGTTGAGAAGGTTGAAGAGCAATCAGGCATTATCAATG TGTCCAAGACAGATATCAACTACGAAGAGCACAAAGGAGAGCTGAAAAGATGTTCTCATATCAGATGA
AA sequence Show only first row Show all	>Potri.014G180200.1 pacid=42764319 polypeptide=Potri.014G180200.1.p locus=Potri.014G180200 ID=Potri.014G180200.1.v4.1 annot-version=v4.1 MPPKKKSKSSSSSTSSAKKNHQNSQQQQQQQQQQQPSKFGIQHFFNLHTQNALSLSQNPQPPPTPPIPQTLSQNPIISPNSLNPKFAPPSNSHHLDADDN VMDVSPEITKSVSLQRFKFSPGMLIKQSQDDGGDEVTWKISPVSERLQAVSKQMPQLIQLLAETSKLNSFSIRPCSSLNDEISSGTAGKVDKQVPSPPWK GADRSLVPASRVGLKRINPRQDVNLTDVNCSLAGRQSPFRTPPSLSYCHEKLSNVAECNGASDQLDQRQHKKALLELLDQVEDAISVEDSEPSTVNSSKT QDGNGYDMPCNAGSLVKEAAIDPPESVAVPLSNYNFLVLEVSEKHRPADLSGAQCPYKVLRLLNEQSGEERTVYLWEEWFYSVISPGDTVNVIGEFDDQG KCDVDRDNNLLIVHPDILVSGTRVAASFSCPRRTVLDERLKCSEHSTAALIGTLLHQIFQAGLMQDNPTINFLEEYARIVLQKNIESLHACGVNENDIFN TLVEAIPKLINWINLFKDSQDSKAPIIDFGPDNGLKKLSISEVIDIEEMAWAPKYGLKGMIDASVRVKVESGRNKADEKIVPLEFKTGKVSNGQSSMEHV AQVILYTLLMSERYLKHIDSGLLYYLQSDQTRGITVQRSDVVGLIMRRNELANDILKASRTQQLPPMLQSLNMCRSCRHLDVCTIYHKVHGGSKESSGLG DLFDSHVHHLTTAHYVFLRRWDQLIDLEAKETQLVKNRIWRPHSLKSDRSTSCLSSVVLDTSDRVPYQKSLKDNRFIYRFVHKKMPLHDVHASGGESLSF PSSSAEDFDYTLKSGDYVIISTKFGHQTVASGFITDISRSHVSVSFPKHLRLPGSNSSSEAHNLFREVWQIDKDEFMTSFSVMRFNLVQLFLQSEQSSHL RKMIVDLEAPRFDSGCIFSQDPALSYIWSVKNLNGDQRRAILKTLTAKDYALILGMPGTGKTSTLVHAVKAMLMRGASILLTSYTNSAIDNLLIKLKAQG IDFLRIGRHEVVHEEVRANCVSAMDVHSVEDIKLRLEQVKVVAVTCLGISSPLLANKKFDVCIMDEAGQITLPIALGPLMFASKFVLVGDHYQLPPLVQS TEARENGMGISLFCRLSEAHPQAISALQSQYRMCQDIMELSNALIYGDRLRCGSSEIANARLKFSGLQSCSSWLKEVLNPGRPVIFINTDMLPAYEAKDS KTVNNPIEAYIVAEVTKELLNNGIVGDDIGIITPYNSQANLIRASVNVTSVEIHTIDKYQGRDKECILVSFARSSENPRNCTSSLLGDWHRINVALTRAK KKLILVGSCKTLSKVPLLKLLVEKVEEQSGIINVSKTDINYEEHKGELKRCSHIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	0	1
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	5.74	0.8673
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	7.07	0.8628
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	7.34	0.8530
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	8.71	0.8589
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	9.21	0.8584
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Potri.007G059100 [exp]	12.96	0.8295
AT1G15780			unknown protein		Potri.001G204900 [exp]	13.41	0.8603
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	14.07	0.8152
AT1G27595			unknown protein		Potri.002G107400 [exp]	17.66	0.8420
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.001G266700 [exp]	17.86	0.8315

Compare expression of checked genes

Potri.014G180200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.