Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 494 / 4e-172 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 376 / 2e-125 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 328 / 6e-107 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT2G46950 329 / 1e-106 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 322 / 1e-104 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14690 318 / 6e-103 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 313 / 4e-101 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14660 312 / 7e-101 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14620 312 / 1e-100 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT4G27710 310 / 4e-100 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035200 [exp] 828 / 0 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 612 / 0 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043000 [exp] 583 / 0 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043100 [exp] 582 / 0 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G263800 [exp] 514 / 7e-180 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 386 / 2e-129 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 374 / 1e-124 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G117600 [exp] 341 / 5e-112 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.010G139400 [exp] 332 / 2e-108 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016310 [exp] 617 / 0 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010821 [exp] 521 / 0 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010802 [exp] 440 / 3e-153 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 365 / 8e-121 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 319 / 2e-103 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025756 [exp] 317 / 2e-102 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10017771 [exp] 315 / 6e-102 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 315 / 7e-102 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10019177 [exp] 313 / 8e-101 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 312 / 1e-100 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G180500.1 pacid=42764666 polypeptide=Potri.014G180450.1.p locus=Potri.014G180500 ID=Potri.014G180500.1.v4.1 annot-version=v4.1 ATGCCTTCTCTTCTTCTAATTCTGATCCTCTTGCTGCTTTTTTGCATCTTGAAACTCACTCTCTCAATGATATGGGTTCCTCTAAGAATCCAAACCCATT TCAAGAAACAAGGCATAAGTGGCCCTAAATACAAGATCATTTTCGGCAACTCGGCAGAGATCCGCCGTTTATTTGCTGCGGCAGCAGAGTCTAAGTCAAC ATGTATCAACCATGATATTCTTCAACGTGTGGCTCCACTGTACTACGAGTGGTCACGCAAGTATGGGAAGACTTTCCTCTACTGGTTTGGATCCAAGCCT AGATTGGCTATGTCCGACCCAGATATGATTAAGGAGATTCTAATGAATACAAGTGGGTCATTTGAGAAGATTCCGTTTAACCCGCAATCAAAAGTTCTGT TTGGAGGAGGGCTTGTTGGGCTTGATGGTGATAAATGGGCTCTACATAGAAGGATCACAAACCAAGCTTTTAACATGGAGCGGGTTAAGGGTTGGGTTCC AGAAATTGTGGGAAGCATTGCCAAGATGCTAGAGAAATGGGAGGGAATAAGAGGAGGGAGAGATGAGTTTGAGATGGATGTGCATAAAGAACTTCATGAC CTCTCAGCAGATATTATATCCAGAACTGCTTTTGGAAGCAGTTATGAAGAAGGGAAGCGCATATTTACATTACAGGAACAACAAATGCATTTAGTTTCTC AAGCTCTGAGAAGTGTCTACATTCCAGGGTTCAGGTTCGTGCCTACTAAGAAGAACAGAGAGAGGAGGAGACTAGAGAATGAAACTCGTGAAGCGATAAG AATGCTGATCAAGAATAACAGCAGAGCAAGAGAAAATTCAAGGAATCTACTTAGTTCACTCATGTCTTCATATAAAAATCACGAAGGGGGAGCCGAAATC CCCAACAAAGGGAAGGAAGATACGTTAGGGGTAGAGGAGATTATAGATGAATGCAAGACCTTCTATTTCGCAGGAAAGGAAACTACTGCCAATCTTTTGA CTTGGTCTCTTATCCTCTTAGCATTACATCAAGAATGGCAAAACAAAGCAAGGGAAGAAGTGTTTTCTGTCTGTGGAGGGAATGATCTTCCAGTGGCAGA GAATTTAAACGATCTCAAGATTGTTAACTTGATACTCAATGAAACACTTCGGCTCTACCCTCCAGCTACTATGTTGATGAGACAAGCATCTAAAAAGGTT AAGCTTGGGACCCTGGACATTCCTGCTGGCACTCAAATCTATTTATCCTTGACTGCTGTCCATCATGATACTGATATATGGGGAGAAGATGGCAGTGAAT TCAATCCCTCGAGATTTAATGAGTCTCGAAATCACTTAGCTTCATTTTTCCCATTTGGGATAGGCCCCAGAATTTGTGTTCCTATGCTCATCAAACATTA CTCTTTCATAGTATCCCCAACCTATGTCCACGCTCCAATGCTCTTTATAAGCTTGCAGCCTCAATATGGTGCACAGATACTTTTCCGCAGGATTTCGAAT TGA
AA sequence Show only first row Show all	>Potri.014G180500.1 pacid=42764666 polypeptide=Potri.014G180450.1.p locus=Potri.014G180500 ID=Potri.014G180500.1.v4.1 annot-version=v4.1 MPSLLLILILLLLFCILKLTLSMIWVPLRIQTHFKKQGISGPKYKIIFGNSAEIRRLFAAAAESKSTCINHDILQRVAPLYYEWSRKYGKTFLYWFGSKP RLAMSDPDMIKEILMNTSGSFEKIPFNPQSKVLFGGGLVGLDGDKWALHRRITNQAFNMERVKGWVPEIVGSIAKMLEKWEGIRGGRDEFEMDVHKELHD LSADIISRTAFGSSYEEGKRIFTLQEQQMHLVSQALRSVYIPGFRFVPTKKNRERRRLENETREAIRMLIKNNSRARENSRNLLSSLMSSYKNHEGGAEI PNKGKEDTLGVEEIIDECKTFYFAGKETTANLLTWSLILLALHQEWQNKAREEVFSVCGGNDLPVAENLNDLKIVNLILNETLRLYPPATMLMRQASKKV KLGTLDIPAGTQIYLSLTAVHHDTDIWGEDGSEFNPSRFNESRNHLASFFPFGIGPRICVPMLIKHYSFIVSPTYVHAPMLFISLQPQYGAQILFRRISN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G180500 [exp]	0	1
AT1G17100			SOUL heme-binding family prote...		Potri.012G088400 [exp]	2.23	0.9234
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.007G088900 [exp]	3.46	0.9361
					Potri.010G219300 [exp]	5.74	0.9325
					Potri.015G025600 [exp]	5.74	0.9173
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037300 [exp]	6.63	0.9313
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G382400 [exp]	8.12	0.9230	Pt-SRG1.2
AT2G42140			VQ motif-containing protein (....		Potri.006G192100 [exp]	8.36	0.9197
AT3G12830			SAUR-like auxin-responsive pro...		Potri.003G070900 [exp]	12.00	0.9046	SAUR14
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	13.85	0.9209	HSP70.7
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283208 [exp]	14.28	0.9134

Compare expression of checked genes

Potri.014G180500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.