Plant FIBer expression Database

Potri.014G180700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G45150 956 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002387
[exp]
999 / 0 AT1G45150 973 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13320 DUF4091 Domain of unknown function (DUF4091)
Representative CDS sequence
>Potri.014G180700.1 pacid=42764139 polypeptide=Potri.014G180700.1.p locus=Potri.014G180700 ID=Potri.014G180700.1.v4.1 annot-version=v4.1
ATGGATAACACAGGAGCGAATCCTCAAGGCATAGTAGTTCCGCCAGTTGAAGGTGTTGCTGGAGGAGGAACAGCTTATGGATGGAATGATGGCGGTGGCG
TACATTTTTCAAATTCCTCACCCAGAGGATCAATCGATCCCTCTGAGGTTTTAACTTCAGATTTAGTGCATGTTTGGTGCTTGCCTAGCACTGCAAATGT
TGGACCGCAAGAGATTCCCAGTAGACATTTGGAGCCTATAAATCTTCTGGCAGCTAGAAATGAGAGAGAAAGTGTTCAAATTGCTTTACGCCCGAAAGCT
ACTTGGGGTGGTTCTGGCAGTGCAGGGGTTGTGCAGGTTCAGTGTAGTGACTTAACCTCCACATCTGGTGATCGGTTGGTCGTTGGACAATCCATAACAT
TGCGGAGAGTGGTTTCTATATTAGGTGTCCCAGATGCTCTTGTGCCTCTAGATCTTCCAGTTAGTCAAATAAACCTAGCTCCTGGAGAAACAACTGCACT
TTGGGTTTCCATTGATGTTCCAAGTGCACAGCCACAGGGTCAATACGAAGGGGAGTTCTTCATCACCGCTATAAAAGCAGAGGCAGAATCTCCATCACAG
CGCTTGGGAAAAGCTGACAGGCATCAGCTGTACTCGGAACTTAGGAACTGTCTTGACATCATGGAGCCCGTTGAAGGAAAACCATTGGATGAAGTGGTAG
AAAGAGCCAAATCTGTGACTACATCTTTAAGAAGGGTTCTTCTATCTCCAGTATTTTCTGAGTTCTCTACAGATAATGGACCAGTTGATATGATGGATGA
AGATGCTATTTCAAACCTAACAGTTCGTGTCAAGCTAAACTTGACTGTTTGGGACTTCGTACTTCCAGCAACTCCTTCACTTCCTGCTGTATTTGGTATA
TCTGATACTGTAATTGAGGATCGTTTTGGTGTTGAACATGGAAGTGATGAATGGTATGAGGCTCTGGATCAACATTTCAAGTGGCTTCTTCATTATAGAA
TCAGTCCATATTTTTGCAGGTGGGGTGGCAACATGCGTGTTTTGACATACACTTGTCCATGGCCAGCTGACCATCCTAAATCAGATGAGTATTTTTCAGA
CCCAAGATTAGCAGCATATGCAGTACCATATAGTCAAGCAGTCCCTGGTGCAGCACAGGACTACTTGCAGAAAGAAATTGACATCTTGAGGACAAAGTCT
CACTGGAAGAAAGCCTATTTTTACTTGTGGGATGAGCCTTTGAATTTGGAACAATATGATATGGTCCGCAGCATGGCCAGTAAGATCCATACTTATGCTC
CTGACGCACGTGTGTTAACTACGTACTATTGTGGACCAAGCGATGCACCCCTTGGGCCTACTCCTTTTGAGGCTTTTGTGAAAGTGCCAAAGTTTCTGCG
CCCACATACTCAAATTTATTGTACAAGTGAGTGGGTGCTTGGTGATCGAGAGGATCTGGCCAAGGAAATTGTCTCTGAATTGCAGCCAGAGAATGGTGAG
GAATGGTGGACATATGTGTGTTTGGGACCCTCTGATCCTCATCCTAATTGGCACATTGGGATGCGTGGTACTCAACACCGTGCTGTGTTCTGGCGTGTGT
GGAAAGAAGGCGCAACAGGTTTTCTGTACTGGGGTGCCAACTGCTATGAGAAGGCTACAGTTCCTAGCGCAGAGATAAGCTTCAGGCGTGGTCTACCTCC
AGGTGATGGAGTTTTATACTATCCAGGCGAGGTGTTCTCATCCTCCCACCAGCCAGTTGCATCTGTTAGACTAGAGCGCATACTAAGTGGCTTGCAGGAC
TTAGAGTACCTGCAACTCTATACTTCAAGATATGGAAGGGGTGAAGGGCTAGCTCTTCTGGAAAAGACAGGCATGTATCTAGGTCCTGAACGTTATACTT
TAGAGCACACGCCAATCGATGTCATGCGGGGTGAGATCTTCAATACGTGCCGATCATGA
AA sequence
>Potri.014G180700.1 pacid=42764139 polypeptide=Potri.014G180700.1.p locus=Potri.014G180700 ID=Potri.014G180700.1.v4.1 annot-version=v4.1
MDNTGANPQGIVVPPVEGVAGGGTAYGWNDGGGVHFSNSSPRGSIDPSEVLTSDLVHVWCLPSTANVGPQEIPSRHLEPINLLAARNERESVQIALRPKA
TWGGSGSAGVVQVQCSDLTSTSGDRLVVGQSITLRRVVSILGVPDALVPLDLPVSQINLAPGETTALWVSIDVPSAQPQGQYEGEFFITAIKAEAESPSQ
RLGKADRHQLYSELRNCLDIMEPVEGKPLDEVVERAKSVTTSLRRVLLSPVFSEFSTDNGPVDMMDEDAISNLTVRVKLNLTVWDFVLPATPSLPAVFGI
SDTVIEDRFGVEHGSDEWYEALDQHFKWLLHYRISPYFCRWGGNMRVLTYTCPWPADHPKSDEYFSDPRLAAYAVPYSQAVPGAAQDYLQKEIDILRTKS
HWKKAYFYLWDEPLNLEQYDMVRSMASKIHTYAPDARVLTTYYCGPSDAPLGPTPFEAFVKVPKFLRPHTQIYCTSEWVLGDREDLAKEIVSELQPENGE
EWWTYVCLGPSDPHPNWHIGMRGTQHRAVFWRVWKEGATGFLYWGANCYEKATVPSAEISFRRGLPPGDGVLYYPGEVFSSSHQPVASVRLERILSGLQD
LEYLQLYTSRYGRGEGLALLEKTGMYLGPERYTLEHTPIDVMRGEIFNTCRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G45150 unknown protein Potri.014G180700
[exp]
0 1
Potri.010G031250
[exp]
1.73 0.9074
AT3G28430 unknown protein Potri.018G140800
[exp]
3.46 0.8921
AT1G75850 VPS35B VPS35 homolog B (.1) Potri.002G019400
[exp]
4.00 0.8892
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
5.19 0.8698
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
6.70 0.8807
Potri.005G156500
[exp]
8.12 0.8371
AT4G36980 unknown protein Potri.005G138200
[exp]
8.83 0.8767
AT3G10440 Shugoshin C terminus (.1) Potri.008G032600
[exp]
9.59 0.8320
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Potri.005G125500
[exp]
10.19 0.8627
AT5G24670 TAD3, EMB2820 tRNA adenosine deaminase 3, EM... Potri.013G094800
[exp]
11.40 0.8692

Potri.014G180700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.