Plant FIBer expression Database

Potri.014G180900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19370 660 / 0 unknown protein
AT1G75140 659 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G262900
[exp]
1086 / 0 AT1G75140 645 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007163
[exp]
707 / 0 AT1G75140 646 / 0.0 unknown protein
Lus10010815
[exp]
702 / 0 AT1G75140 648 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G180900.1 pacid=42764284 polypeptide=Potri.014G180900.1.p locus=Potri.014G180900 ID=Potri.014G180900.1.v4.1 annot-version=v4.1
ATGGCAAATACTCACCAAGGCAAGCTGTTCCTTTTCCTTTATTTGCTTTCCATTTCCTGTTCTCCATCTAGAATTTTGGCAGACTCTAGCTCAGTCTCAA
CCCAACAAGAGCTGGAGCATGATATCAATCATGCTCGTTATCAAGAACAAGAGTCTGACACTAGAATTAAGCTTAATCAGCAAGAAGTTTTGTTACATAA
ACTTGAACAACTAGTGAGGAACCTTAGTGAAATAGTTGCTAGATTAGAGCCTAAATTATCTGAGTTACCAAAAGTAGCATCTATTGGTAGGGAACAGAAT
CAAGAGGCAGAAAGGATTGATCAGGGAAAATTTGATGGTAAGAGATTGGTTCAAAAAGTTGAACAAGAGGGATTCGAGGTTAAGACCACTAGAGATGGAG
AGAGGGTGAGGACTGGTTCAGTTACCAAGTACAGTCCATTGTGGTCAGAGAGGTTTCAATTTGTGTCTGCTGTGAAACTAGATTCTGATGCAACGTGCAT
TCATGTTTTGCCATTTAGAGATTACGAGGGGCTTAGTAAGTATGTTGCTGTTGGTGATGATCGAGGGAGGGTTTATGTGTTTTTGAGGAATGGGGATGTA
GCGGTTGAATTCTACACAATGTCCTCTTCACCAATTACAACAATGGTTTCATATTTATCGGCTTTTAAGAATCAGAGTACTGTGGTAACAGGGCATCAGA
ATGGTGCAATTTTGATGCATAAACTTCACTATGTGTCGAATGGAGAAGAGTGGAGTACACTTTCTATGGAAAATGTGGGTAAGTTTGCGTTCCATGAGGA
TTGGGATCAACGTTCGCCTATAAGTATCTTGGAAGTGCATCATGTTGGCAGATCAAGGTATATCTTGTCATTAGATGTTAGAGGGATGATTAGGGTTTTT
AGGGAAAATGGGACGGTTCATGGCTCTGCCATGCCAACAAGTAGACCACTTGCATTCTTGAAGCAAAGGCTTTTGTTTTTGACAGAAAGTGGTGCAGGGT
CATTGGATTTGAGGAGCATGAAAGTCAGAGAATCTGAATGTGAAGGTTTGGACCATTCTGTTGCTCGGTATTATGTTTTTGATGCTACCGAACGGTCTAA
AGCATATGGGTTTACATCAGAAGGGGAATTGATTCAAGTATTGTTGTTGGGGGATATAATGAACTTTAAATGCAGGGTCAGATCCAAGAGAAAATTCGAC
ATGGAGGAACCCCTTGCTTTACAATCCATCAAGGGCTACTTGTTTGTTGTTAATGAAGAGAAGGTCTTCGTGTACAATGTTTCATCTCAGCATTATGTTA
GGGTTGGGGGACCTCGCCTTCTCTTCTCTGCTGGTCTGGATGAGATCAAATCGTCATTTTTGAACTATCAGTTGACAAATGCTCCCATTGAGAGAAGAAG
AGTGATGCCATTAATTGCCAGCGACCGTGAAAAAATCGTTGTTCTTGGCCTCGGGAGTGGGTATGTGGGAATGTATCGCTCTAACCTTCCAATATTTAAA
GGAGAATTCAACACAATGCTATGGACAAGTCCTGTGCTGCTCTTCGTACTCTTTCTCTTTGGAGCATGGCAATTCTTTGCCAAGAAGAAGGAAGCGCTTA
CGTCGTGGGGGCCTGACGATCCTTTTAGCTCCGCATCTGCTACAATTGGAGCTCCAGTAGGGTCATCGGCCTCCGCAGACAGGTCATATGTAGATTCATC
TTCAAGAAGTACTGATATGATGGAATTAAGGGCTGGGGGATTGATAGGTCCAACAAGGAGGTATCCTTCTCCCTCGCGATATCCTGGGGGAGCAACCAGT
TCCTTCAGGCCAGGTTCTGCAGATGCCAACACTAGACCTTCCTCTATTGATCCGAATTACAGAGCATCATCGGAGCTAACATTCAGGGGTCCAGCTCTGG
AATCCACAGGTTTCCCTATAAGAAGGGAGAATCTGTTTGTAAACAATCAAGTTGTGGATGATGTCAATTGA
AA sequence
>Potri.014G180900.1 pacid=42764284 polypeptide=Potri.014G180900.1.p locus=Potri.014G180900 ID=Potri.014G180900.1.v4.1 annot-version=v4.1
MANTHQGKLFLFLYLLSISCSPSRILADSSSVSTQQELEHDINHARYQEQESDTRIKLNQQEVLLHKLEQLVRNLSEIVARLEPKLSELPKVASIGREQN
QEAERIDQGKFDGKRLVQKVEQEGFEVKTTRDGERVRTGSVTKYSPLWSERFQFVSAVKLDSDATCIHVLPFRDYEGLSKYVAVGDDRGRVYVFLRNGDV
AVEFYTMSSSPITTMVSYLSAFKNQSTVVTGHQNGAILMHKLHYVSNGEEWSTLSMENVGKFAFHEDWDQRSPISILEVHHVGRSRYILSLDVRGMIRVF
RENGTVHGSAMPTSRPLAFLKQRLLFLTESGAGSLDLRSMKVRESECEGLDHSVARYYVFDATERSKAYGFTSEGELIQVLLLGDIMNFKCRVRSKRKFD
MEEPLALQSIKGYLFVVNEEKVFVYNVSSQHYVRVGGPRLLFSAGLDEIKSSFLNYQLTNAPIERRRVMPLIASDREKIVVLGLGSGYVGMYRSNLPIFK
GEFNTMLWTSPVLLFVLFLFGAWQFFAKKKEALTSWGPDDPFSSASATIGAPVGSSASADRSYVDSSSRSTDMMELRAGGLIGPTRRYPSPSRYPGGATS
SFRPGSADANTRPSSIDPNYRASSELTFRGPALESTGFPIRRENLFVNNQVVDDVN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19370 unknown protein Potri.014G180900
[exp]
0 1
AT3G62200 Putative endonuclease or glyco... Potri.005G003800
[exp]
7.74 0.8062
AT1G73840 ESP1 ENHANCED SILENCING PHENOTYPE 1... Potri.012G056200
[exp]
11.87 0.8114
AT2G26920 Ubiquitin-associated/translati... Potri.009G021900
[exp]
14.49 0.8061
AT5G07900 Mitochondrial transcription te... Potri.001G029400
[exp]
14.49 0.8085
AT1G79090 unknown protein Potri.011G143900
[exp]
21.56 0.8074
AT5G49220 Protein of unknown function (D... Potri.008G213300
[exp]
24.28 0.7960
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.002G189700
[exp]
26.83 0.7711
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Potri.018G140100
[exp]
26.98 0.7997
AT1G71800 CSTF64 cleavage stimulating factor 64... Potri.002G061200
[exp]
27.49 0.8045
AT1G26650 unknown protein Potri.008G091500
[exp]
27.71 0.7747

Potri.014G180900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.