Plant FIBer expression Database

Potri.014G181200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56870 181 / 3e-47 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G262601
[exp]
181 / 6e-53 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018851
[exp]
254 / 5e-71 AT3G56870 158 / 5e-40 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G181200.1 pacid=42763118 polypeptide=Potri.014G181200.1.p locus=Potri.014G181200 ID=Potri.014G181200.1.v4.1 annot-version=v4.1
ATGGAGTTAAGGAGTTGCAGTCATTTGCATTTTATCCAGACTGTTGAAGGCGGTAAAATGATGAATGTGTTTCGTGGAAAGCCTGCACTGAAGTTCAAGG
AGCTCAAAGATATATATGAAACTGGTGAGGCTGGAAATCATCATTTGCTCCCAGCGGCTAGACCAAAACTTGAGCTCGAGGACTGGTCAATTGACAGTGA
CAGGGCGGAGACTGAAAGTCTACATGTGCTTGCAGGAGCAACAATAAAAATTGAGAGCGAATCTCCGGAGTCAAACTGCAGCAGTGTTGTCGATGGAGGA
AAAACTGAATCAGACGATGTTAACTTTGGTACTATGACGCTGAAGCAATTTAAGGAGAGATACAAATCAAAGAAAAGGAAACTTTCACGAAATGCTGGTT
TGATTGGACAAACCAGTGAAACTTGCTCCCCTGCTAAACAAGAACCTCCTGACTCACAATTTGAATTGGAAGAACTCGAGGCTATGGAGCCCCTTAGTAG
TTGGAAATCCAGAATTTTAAAGAGTAGGAAGAAGAAAAGAAAGTGCAGATTAGAAAGCAGCTTTTCCAGTTCATCTGAAAGTGCGCCATGTATAGTGAAA
TCTAAGAGAGAGAAAAGTGACCAGGTCATTTTTCAATCTAGTGGGATTTTACCTGCACCTATTGATGTTAAAGTTGAGGTTATGGAGCCTATTTCCTTTG
ATTGCCGATATGTGACTTTAATAAATTCCTCGGGTGGTTGTGGTGAGCCATTGGCTTCTAGTCTTGTGGTATCTAGTGGAGAGCCTGAGATAGCTGATGG
TTGTGTTTTGGGGACTGGAACGTTAATTGTATCCGTTGAAGAGCCTGAGACAGCCAATTATGGCGGTCCTCCAATGCCAGTGTTTTCCAGTGATGAGCCT
CAATGCTGTGTTGTTAATGATCAATCCTATGAAGGCAGGGGTCATGTTAATCCTGAATCAATTCTTGATGTTAATGCTTCTTGTGGGGAGATATTGACGG
TGGATATAGTTGAAGCAATCAGTGTCCCGTCTTCAGATTTGTCCCTGTCAGAAATAAAGGAAGAAGATTATGTTGTAGATTCACACCCCAGTGTTGACCC
CGCTGGAGTAGTCTCACCAATTAAGGGTGATAGCTCCATTGCATACAATGACTCCCAAAGTGAAGAGTCTGAGAGAGTTGAGGATCATGGTTTTGAGACT
CACAAGTCAACTTTCTTCAGTAATGAGCTCCAATGCTGTGCTGTTAATGAAGAATCCTATGAACCTGTGGAGCATGCTGATCCTAAATCAATGCCAGATG
TAAGAGCCTCTGGTGGGGAGATAAGAATGGTGGATGTTGCAGAACTAACTACTGATCATAAGCCTGAGAGAGTTGAGGATCATGGTTTTGAGACTCACAA
GTCAACTTTCTTCACTAATGACCTCCAATGCTGTGTTGTTAACGAAGAATCCTATGAACCTGTGGAGCATGCCGTTCTTAAATCAATGCCTGATATAAGA
GCCTCTGGTGAGGAGATAATAATGGTGGATGTTGCAGAACTAACTACTGATCATAAGCCTGAGAGAGTTGAGGATCATGGTTTTGAGACTCACAAGTCAA
CTTTCTTCACTAATGACCTCCAATGCTGTGTTGTTAACAAAGAATCCTATGAACCTGTGGAGCATGCCGTTCTTAAATCAATGCCTGATATAAGAGCCTC
TGGTAGGGAGATAATAATGGTGGATGTTGCAGAAGTAACTACTGATCATAATTCATGTTTGTCTTCAGCAGAGCTAAAGAAAGAATCTTCTGCTGCATAC
CCACATCCCCAACATTGTGGGGATGACTCCATTGAGGTCGCTTCCCCAAGCAAGGATCATGCATCTGATATGGGCAATGACTCTCAAAATCTTCATGGCA
TGCACGAGTTGTCAGAGTCTAAAAGTTACAGTCAAGTTCCTGACACCTCCATGGTTAATATCTCTCATTCTACAGAACTCAGCAACAGACATGGTTTACA
TCTCTCCGAAGATGAAGCAAAAGACGATAGGCCTCATGTTGAAGCCAGCGTGATAAGCAGCCCTGTCAGTGGCTTTATCTCACTCAGGGATTCAAATTTA
TGCTCAGGTCAAGATGGCTGCTTAGCATCTGCTGCAGCTAAAGAAAAGAAGGCCCCACTATCTGCCTGTGCCGATGCAGCAAGAAAGTTCTCTGCAGTAA
CCTGTGTTGATGAACCTGTAACATTGGCAAATGTTCAGGGACGCCATCACTCAAAGCTACAACATCTTCCTGAAAAGCTCCTTTCGACCCGGAAGGCAAT
TTCTCCAACATCTCAAAAAAAACTGTGCAAGGCTATGGAGGCCAGTGACTTAGACGATGAAGAATATTACAAGTATACAAGGAAATTATGCTACAGGAAT
TTGAATGGGAATAAGATTGGTAGGCTTGGAAGAGCCAATCAAAACCAGAGAGTTGATCTCACTATTAGCCCTGAGCGGATCACCAGGAAACCAAAGAATG
ATAAAAATGGTTTCCATCATAAAGGCATTCTCAAGGTTCCTCAACCTTCTGGAACTGTACCACGTTTTGGCACAGGGTGCAGCTCTGTCCAAAGCTGTTC
AGAGAGTGCCATTTCATTTTCACAGAAGCAAATGCGTGATATTGAATCTATTGCAACTAAACTTACAAAAGAGTTGAACTCCATGAAGGATGTTGTTCAA
GAATCATGGCACTCCAAGGTCTATCCAGCTACGCCCTTGAAATATAGTGCAGATGAGGTGAAAATTGCTGTTCAAAATGCAACAAGAGTGGAAGAAAGTG
CAAGAAGATGGCTTTCCATCATGGCAAGGGATTGTAACCGTTTTTGTAAAATCATGAAATTGACTGACAAAGCTTCTCCGACTTCTGGAAATGTGGTCCA
CAAGGAGAAGAGGAAGATAGTTTTTGCTGATGAGGCCGGCGGAAAGCTTTGTGATGTCAAGACTTTTGAGAATGACACTGCTTCTGTCACAGGGTCTTCT
AGCAGTGACAAATAG
AA sequence
>Potri.014G181200.1 pacid=42763118 polypeptide=Potri.014G181200.1.p locus=Potri.014G181200 ID=Potri.014G181200.1.v4.1 annot-version=v4.1
MELRSCSHLHFIQTVEGGKMMNVFRGKPALKFKELKDIYETGEAGNHHLLPAARPKLELEDWSIDSDRAETESLHVLAGATIKIESESPESNCSSVVDGG
KTESDDVNFGTMTLKQFKERYKSKKRKLSRNAGLIGQTSETCSPAKQEPPDSQFELEELEAMEPLSSWKSRILKSRKKKRKCRLESSFSSSSESAPCIVK
SKREKSDQVIFQSSGILPAPIDVKVEVMEPISFDCRYVTLINSSGGCGEPLASSLVVSSGEPEIADGCVLGTGTLIVSVEEPETANYGGPPMPVFSSDEP
QCCVVNDQSYEGRGHVNPESILDVNASCGEILTVDIVEAISVPSSDLSLSEIKEEDYVVDSHPSVDPAGVVSPIKGDSSIAYNDSQSEESERVEDHGFET
HKSTFFSNELQCCAVNEESYEPVEHADPKSMPDVRASGGEIRMVDVAELTTDHKPERVEDHGFETHKSTFFTNDLQCCVVNEESYEPVEHAVLKSMPDIR
ASGEEIIMVDVAELTTDHKPERVEDHGFETHKSTFFTNDLQCCVVNKESYEPVEHAVLKSMPDIRASGREIIMVDVAEVTTDHNSCLSSAELKKESSAAY
PHPQHCGDDSIEVASPSKDHASDMGNDSQNLHGMHELSESKSYSQVPDTSMVNISHSTELSNRHGLHLSEDEAKDDRPHVEASVISSPVSGFISLRDSNL
CSGQDGCLASAAAKEKKAPLSACADAARKFSAVTCVDEPVTLANVQGRHHSKLQHLPEKLLSTRKAISPTSQKKLCKAMEASDLDDEEYYKYTRKLCYRN
LNGNKIGRLGRANQNQRVDLTISPERITRKPKNDKNGFHHKGILKVPQPSGTVPRFGTGCSSVQSCSESAISFSQKQMRDIESIATKLTKELNSMKDVVQ
ESWHSKVYPATPLKYSADEVKIAVQNATRVEESARRWLSIMARDCNRFCKIMKLTDKASPTSGNVVHKEKRKIVFADEAGGKLCDVKTFENDTASVTGSS
SSDK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56870 unknown protein Potri.014G181200
[exp]
0 1
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Potri.001G358100
[exp]
1.41 0.9350 Pt-ATBRCA1.1
AT4G29910 EMB2798, ORC5, ... EMBRYO DEFECTIVE 2798, origin ... Potri.014G085900
[exp]
1.41 0.9214
AT1G67320 EMB2813 EMBRYO DEFECTIVE 2813, DNA pri... Potri.003G169300
[exp]
2.44 0.8757
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.002G121500
[exp]
3.00 0.9192 CYCA3.1
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Potri.012G060000
[exp]
4.47 0.8844 Pt-MSH2.1
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.018G112800
[exp]
4.89 0.8664
AT2G40550 ETG1 E2F target gene 1 (.1) Potri.019G056200
[exp]
7.93 0.8618
AT2G36200 P-loop containing nucleoside t... Potri.006G210700
[exp]
8.36 0.8799
AT5G52220 unknown protein Potri.015G140200
[exp]
8.94 0.8164
AT5G59970 Histone superfamily protein (.... Potri.007G013500
[exp]
11.48 0.8490 HFO909

Potri.014G181200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.