Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36660 157 / 5e-49 Protein of unknown function (DUF1195) (.1) AT5G65650 140 / 1e-42 Protein of unknown function (DUF1195) (.1) AT1G19380 115 / 4e-33 Protein of unknown function (DUF1195) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125000 [exp] 149 / 5e-46 AT5G65650 204 / 1e-67 Protein of unknown function (DUF1195) (.1) Potri.007G027700 [exp] 147 / 3e-45 AT5G65650 206 / 2e-68 Protein of unknown function (DUF1195) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014322 [exp] 155 / 5e-48 AT5G65650 244 / 3e-83 Protein of unknown function (DUF1195) (.1) Lus10026030 [exp] 149 / 1e-45 AT4G36660 239 / 1e-81 Protein of unknown function (DUF1195) (.1) Lus10007156 [exp] 134 / 3e-40 AT4G36660 142 / 1e-43 Protein of unknown function (DUF1195) (.1) Lus10010810 [exp] 124 / 5e-36 AT4G36660 152 / 3e-47 Protein of unknown function (DUF1195) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06708 [poplar] [flax] DUF1195 Protein of unknown function (DUF1195)
Representative CDS sequence Show only first row Show all	>Potri.014G181600.1 pacid=42764465 polypeptide=Potri.014G181600.1.p locus=Potri.014G181600 ID=Potri.014G181600.1.v4.1 annot-version=v4.1 ATGAACGAAGATGATGCACCGACAGTCATAACAATACCTTCAACAGTCACCTCCACCTCCACCCCAACCACCACCACCACCACAACAGTAGTAAAGAGAG AAAGCTCAGAATCTAGTCTACTATGTAAGACTCGTTACAAATTCTGGGTCTTATCTGCAATCCTCCTCCTTGCTTTCTGGTCCATGTTCACTGGCTCTAT TACTCTCAAATGGTCCACTGGTGACCTCTCACAACACCCTGACAACCTCGGCTTCCAAACTCAAGATGATGTCGACATTCTCGAAGTGGAGGAGAAGAAG AAACTGGTGTGGCGCATGTGGGACGTGTACACGCATAGCAGTAGGGGTACAAGATTGCCTCGATTTTGGGAACGGGCTTTTCAAGCTGCTTATGAGGCTT TAGCAAGTGATGTGACTGCTGTTCGAGATGCTGCTGTTTATGAGATTGCCAAGCTTTCTATTAGCTCCACCATCAATCTTGATGACCCTTTTCCTGTTCA ATCTACAACGCCGAAGGAGAAAATATCTCAAGTTAGCAACGGAAAGTACTGA
AA sequence Show only first row Show all	>Potri.014G181600.1 pacid=42764465 polypeptide=Potri.014G181600.1.p locus=Potri.014G181600 ID=Potri.014G181600.1.v4.1 annot-version=v4.1 MNEDDAPTVITIPSTVTSTSTPTTTTTTTVVKRESSESSLLCKTRYKFWVLSAILLLAFWSMFTGSITLKWSTGDLSQHPDNLGFQTQDDVDILEVEEKK KLVWRMWDVYTHSSRGTRLPRFWERAFQAAYEALASDVTAVRDAAVYEIAKLSISSTINLDDPFPVQSTTPKEKISQVSNGKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36660			Protein of unknown function (D...		Potri.014G181600 [exp]	0	1
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	4.24	0.8573
AT5G51840			unknown protein		Potri.012G132832 [exp]	6.32	0.8365
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	7.93	0.8155
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	11.18	0.8297
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074700 [exp]	14.38	0.8115
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	15.29	0.8369
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.016G032100 [exp]	15.90	0.8094
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	22.27	0.7812
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	28.14	0.7519	WAVE4.1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	28.49	0.7847

Compare expression of checked genes

Potri.014G181600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.